Pairwise Alignments

Query, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella amazonensis SB2B

Subject, 274 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  288 bits (737), Expect = 8e-83
 Identities = 141/259 (54%), Positives = 181/259 (69%), Gaps = 1/259 (0%)

Query: 2   RIALGIEYDGSKFYGWQRQAE-VNSVQAELERALSIVANEPIEVQCAGRTDAGVHATGQV 60
           RIALG+EY GS++ GWQRQA  V +VQ  LE ALS VA+ P+ + CAGRTDAGVHA GQV
Sbjct: 8   RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 67

Query: 61  VHFDTNAVRKEGAWTLGVNVHLPDDIAVRWAMPVNDDFHARFSATARRYRYVIFNHNFRP 120
           VHFDT A R   AW +G N++LP D++V WA  +   FHARF A ARRYRYVI+N   RP
Sbjct: 68  VHFDTQAERSMKAWVMGANINLPHDVSVTWAKVMPAHFHARFKAIARRYRYVIYNDQIRP 127

Query: 121 GILRKGVSHYHGDIDVERMHDAAQALIGERDFTSFRAIGCQSNTPFRNVHKVSVSRHGMY 180
             L + ++  H  +D ERM +AAQ L+G  DF++FRA  CQ+ +P + VH + V+RHG  
Sbjct: 128 AHLNEEITWNHRPLDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIKEVHHLRVTRHGKM 187

Query: 181 IVVDIQANAFLHHMVRNIVGSLLEIGLGNQPLDWMATLLEAKDRSQAAATAKPHGLYLVD 240
           IV+DI+A AFLHHMVRNI G L+ IG G +P++W   +LE++ R     TA P GLYLVD
Sbjct: 188 IVLDIRAGAFLHHMVRNIAGVLMTIGTGERPVEWAKEVLESRVRRTGGVTAHPFGLYLVD 247

Query: 241 VTYPESFGLPKLSLGPLFM 259
           V Y + F LP+  +GP F+
Sbjct: 248 VEYRDEFELPERFIGPHFL 266