Pairwise Alignments

Query, 1030 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

Subject, 1099 a.a., Error-prone DNA polymerase from Xanthobacter sp. DMC5

 Score =  791 bits (2043), Expect = 0.0
 Identities = 477/1068 (44%), Positives = 644/1068 (60%), Gaps = 74/1068 (6%)

Query: 1    MYAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDA---- 56
            +YAEL A S++SFLRGAS P  LV  A  LG   + I D  +VAGVV+A+ A  D     
Sbjct: 5    VYAELAAASHFSFLRGASAPAHLVRTAVGLGLDGLGIADRNTVAGVVRAYSALEDLRALD 64

Query: 57   ---------------------GISLIVGSEFRLQQGTFVLLA--TSRAGYGALCRLISRG 93
                                    L+ G+      GT  ++A  ++RAG+G LCRL++ G
Sbjct: 65   EDLEADDPEADAKRAVAARARAFRLVTGARLVFCDGTADIIAYPSTRAGWGRLCRLLTTG 124

Query: 94   RRRAPKGEYRINLDDLLSPLPDCVLLWRPPMPQNPGTDIAATEQHWFATQKQLAKQLTPW 153
             RRA KG+  ++L DLL+ + D +L+    MP   G+D+             L++     
Sbjct: 125  NRRAKKGDCHLSLADLLADVRDLMLI---VMPGEDGSDLPPL----------LSRLGEAA 171

Query: 154  QGRRYLLAEQCLEAAGSLWQRYLMRLSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLG 213
             G  +L  +     A       L  ++    +P +A  DV   +   + L D+LTC+R  
Sbjct: 172  PGAVWLGVDMPFSGADRRRLAALKAIARTACVPLLAVNDVLYATPEERDLQDILTCVRES 231

Query: 214  LRLDEAEGHLCQNAEHYLRPLGSIHR--RYPQEWIANTQKIASQCRFSMAELRYEYPAEL 271
              + EA   L  NAE +L+P   + R  R   E +A +  + ++  F++ EL+Y+YP E 
Sbjct: 232  TTIAEAGRRLLANAERHLKPAAEMARLFRDAPEAVAESGALLARIDFTLKELKYDYPEEP 291

Query: 272  VPAGFSASEYLAREVAKGARRRYGLAVPAAVKRQYLAELKLIHELEYEYFFLTIYDIVRF 331
            VP G++   +L     + A  RY   VP  V++    EL LI +L+Y  +FLTI+DIVRF
Sbjct: 292  VPPGWTPQAWLEELTWRCAAVRYPEGVPEKVEKLLRDELALIRKLKYAPYFLTIHDIVRF 351

Query: 332  ARRKRILHQGRGSAANSVVCFCLGITEVDPTRVNMLFERFISKERHEPPDIDVDFEHERR 391
            A  + IL QGRGSAANS VC+ LGIT VDP   ++LF RFIS+ER EPPDIDVDFEH RR
Sbjct: 352  AESQGILCQGRGSAANSAVCYVLGITAVDPADNDLLFARFISEERREPPDIDVDFEHARR 411

Query: 392  EEVIQYIYRKYGRHRAALAASVITYRLKSAMGEVGKVLGLDRELVARLIQ------GIDR 445
            EEVIQ+IY KYGRHRA + A+VI YR +SA+ +VGK LGL  ++ ARL        G D 
Sbjct: 412  EEVIQHIYDKYGRHRAGIVATVIHYRPRSAIRDVGKALGLTEDVTARLASTQWGSWGRDI 471

Query: 446  RDPSHPWREQLAAQLPSADMFGYLVQSLLGFPRHLSQHVGGFVISAGPLAELVPVENAAM 505
             D +H     L    P       L   L+G PRHLSQHVGGFV++ G L + VP+ NAAM
Sbjct: 472  SD-AHIREAGLDPSNPFIRRAVELAGRLMGAPRHLSQHVGGFVLARGRLDDTVPIGNAAM 530

Query: 506  EDRTVIQWDKDDLEALGLLKVDVLALGMLTAIRKCFELISRHQQ-PFGMRSIKAEDPNVY 564
             DRT I+WDKDD++ LGL+KVDVLALGMLT IRK  +L+  H+   +G+  + +   +VY
Sbjct: 531  ADRTFIEWDKDDIDVLGLMKVDVLALGMLTCIRKALDLMRNHEGIDWGLADVPSGQADVY 590

Query: 565  RMLSRGDSMGVFQVESRAQTSMLPRLRPACYYDLVIQIAIVRPGPIQGDMVHPFLRRRKG 624
             MLSRGDS+GVFQVESRAQ +MLPRL+P  +YDLVIQ+AIVRPGPIQGDMVHP+LRRR G
Sbjct: 591  AMLSRGDSIGVFQVESRAQINMLPRLKPQKFYDLVIQVAIVRPGPIQGDMVHPYLRRRSG 650

Query: 625  LEAVTYPSEA--------VKAVLERTMGVPIFQEQVIKLAMVAAGFSGGEADALRRAMAS 676
            LE V YPS A        + +VL++T+GVP+FQEQ +KLAMVAA FS  EA+ LRRAMA+
Sbjct: 651  LEKVDYPSPAPHLGDKDELHSVLDKTLGVPLFQEQAMKLAMVAARFSAKEANRLRRAMAT 710

Query: 677  WKHTGKLWSFEQKLLDGMAARGYSEDFARQIFRQIQGFGEYGFPESHSASFALLAYVSAY 736
            +++ G +  FE  +++ M ARGY  DFA + F QI+GFG YGFPESH+ASFA L Y+S+Y
Sbjct: 711  FRNLGTIQEFESMMVERMVARGYKRDFAARCFEQIKGFGSYGFPESHAASFAKLVYISSY 770

Query: 737  LKLYHPAAFCCALLNSQPMGFYSPSQLLQDVRRHGVEVFDVCINHSQWDSSLVKTATG-F 795
            +K  HPAAF CALLN+QPMGFY+P+Q+++D   HGVEV  + +N S  D++L +   G  
Sbjct: 771  IKCRHPAAFACALLNAQPMGFYAPAQIVRDAHEHGVEVRPIDVNFSHHDNTLERRDDGAL 830

Query: 796  AIRLGFRQVKGLKEQAMQRLVDVRSAAGFAHLSEIS--MLLDRHALELLAAADAFRLLSG 853
            A+RLGFRQV G   +  +RL   RS   FA + +++    L   A++LLA ADAFR +  
Sbjct: 831  ALRLGFRQVDGFHAEWGERLAAARSGP-FASIEDLARRARLPTRAVKLLADADAFRSMDL 889

Query: 854  HRFQSRWQLSARQA----SLPLFDDLPEPLKPVGTEPSLDAPNAVQC--LKADYRSKGLS 907
             R  + W   AR+     +LPLF       + +G E  +  P   +   + ADY++  LS
Sbjct: 890  DRRAALWH--ARRLPDDDALPLF--AAADARELGVEEEVTLPRMARSEHIVADYQTVRLS 945

Query: 908  LGQHPMALLRIAGLLGKSLTAKALENTRHGQLVTVAGVVTGRQRPGTASGVTFITLEDET 967
            L  HPM  LR      + LT       + G  V  AGVV  RQRPG    + FIT+EDET
Sbjct: 946  LKGHPMGELRDHFRKERILTCAETSALKDGAFVRNAGVVLVRQRPGNGKAI-FITIEDET 1004

Query: 968  GNTNLIVWMGTARAQRKPYLTSTILKVSGTVEHA-DGVTHVVAGRLED 1014
            G TN+++W  T    R+  + + +L V G ++ + +GV H++A RL D
Sbjct: 1005 GITNIVLWERTLERFRREVMGARLLLVEGRIQKSPEGVVHLMAQRLTD 1052