Pairwise Alignments

Query, 1030 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

Subject, 1118 a.a., error-prone DNA polymerase from Variovorax sp. OAS795

 Score =  859 bits (2219), Expect = 0.0
 Identities = 511/1105 (46%), Positives = 672/1105 (60%), Gaps = 97/1105 (8%)

Query: 2    YAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDA----- 56
            YAELH ++++SF RGAS P ELV  A +LGY+A+AITDECSVAG+V+AH+   +      
Sbjct: 35   YAELHCLTHFSFQRGASTPEELVERAYQLGYAALAITDECSVAGIVRAHVCLRELPAKLE 94

Query: 57   ----------------GISLIVGSEFRLQQGTFVLLATSRAGYGALCRLISRGRR-RAPK 99
                            G  L+ GSEFR ++   V++A+   G+G LC  I+  R    PK
Sbjct: 95   EYEREHPDEPPIPRNPGFRLLFGSEFRFERFRLVVIASGTEGWGNLCEFITAARNTELPK 154

Query: 100  GEYRINLDDL-LSPLPDCVLLWRPPMPQNPGTDIAATEQHWFATQKQLAKQLTPWQGRRY 158
            G+YR++ +   ++ L DC +L+ P        + A   +   A +    + L       +
Sbjct: 155  GQYRVSWEGSDVASLQDCQVLFVPHRMPGGALEAATLHEDLMAAKALYGENL-------W 207

Query: 159  LLAEQCLEAAGSLWQRYLMRLSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDE 218
            L  E   E    LW   LM       +P VAAGDV MH+ + +PL DVLT +R G  + E
Sbjct: 208  LAVEMLNELDDDLWFVALMEAGEQAGVPLVAAGDVHMHARSAKPLHDVLTAVREGKTVAE 267

Query: 219  AEGHLCQNAEHYLRPLGSIHRRYPQEWIANTQKIASQCRFSMAELR--YEYPAELVPAGF 276
                L  NAE +LR    +   Y    ++NT  +A++C F    +R  Y+YP E V +  
Sbjct: 268  CGFALQSNAERHLRQRVRLAELYLPGMLSNTLAVAARCSFDPEVIRENYQYPLETVGSRE 327

Query: 277  SASEYLAREVAKGARRRYGLAVPAAVKRQYLAELKLIHELEYEYFFLTIYDIVRFARRKR 336
            + +E L R+  +GA  RY   VPA V+ Q   EL LI EL+YE FFLT+ DIVRFAR + 
Sbjct: 328  TPAETLVRKTWEGASERYPHGVPAKVREQVQKELDLILELKYEMFFLTVEDIVRFARSQH 387

Query: 337  ILHQGRGSAANSVVCFCLGITEVDPTRVNMLFERFISKERHEPPDIDVDFEHERREEVIQ 396
            IL QGRGS+ANS VCFCLGIT +DP + ++LFERF+S+ RHEPPDIDVDFEH+RREEVIQ
Sbjct: 388  ILCQGRGSSANSAVCFCLGITAIDPEKGHLLFERFLSRHRHEPPDIDVDFEHQRREEVIQ 447

Query: 397  YIYRKYGRHRAALAASVITYRLKSAMGEVGKVLGLDRELVARLIQGIDRRDPSHPWREQ- 455
            YIY+KYGR RAA+AA VI YR +SA+ +VGK LG+D+ L       ID     H W +  
Sbjct: 448  YIYQKYGRERAAIAAVVICYRSRSALRDVGKALGIDQRL-------IDEFAKDHYWFDDT 500

Query: 456  -LAAQL-PSADMFGY------------LVQSLLGFPRHLSQHVGGFVISAGPLAELVPVE 501
             L  QL  +A   G             + + L GFPRHLSQHVGGFV++   L  LVPVE
Sbjct: 501  VLGDQLFKAAARVGVEEDELRLVQWIEMTRRLKGFPRHLSQHVGGFVLTHTRLTRLVPVE 560

Query: 502  NAAMEDRTVIQWDKDDLEALGLLKVDVLALGMLTAIRKCFELISRHQ-QPFGMRSIKAED 560
             A+M+DR+VIQW+KDDLEA+G+LKVDVLALGML+AIR+  + ++R +     M  I+++D
Sbjct: 561  KASMKDRSVIQWEKDDLEAMGMLKVDVLALGMLSAIRRGLDHMNRWRGSAVQMHHIRSDD 620

Query: 561  PNVYRMLSRGDSMGVFQVESRAQTSMLPRLRPACYYDLVIQIAIVRPGPIQGDMVHPFLR 620
              V+ M+   D++GVFQ+ESRAQ SMLPRL+P  Y DLVI++AIVRPGPIQG MVHP+L+
Sbjct: 621  QKVFDMICDADTVGVFQIESRAQMSMLPRLKPRRYEDLVIEVAIVRPGPIQGGMVHPYLK 680

Query: 621  RR----KGLEAVTYPSEAVKAVLERTMGVPIFQEQVIKLAMVAAGFSGGEADALRRAMAS 676
            +R    KGL A+ Y  E ++  LERT+GVPIFQEQV+++AM+AA F+  EAD LRRAMA+
Sbjct: 681  QRERLAKGL-AIHYEKEELRPALERTLGVPIFQEQVMQIAMIAADFTADEADQLRRAMAA 739

Query: 677  WKHTGKLWSFEQKLLDGMAARGYSEDFARQIFRQIQGFGEYGFPESHSASFALLAYVSAY 736
            WK  G L  F  KL+ GM  +GY   FA  IF+QI GFG+YGFPESH+ASFALL  VS++
Sbjct: 740  WKRKGGLDKFHDKLVQGMIRKGYKASFAESIFKQILGFGDYGFPESHAASFALLVTVSSW 799

Query: 737  LKLYHPAAFCCALLNSQPMGFYSPSQLLQDVRRHGVEVFDVCINHSQWDSSLVKTATGF- 795
            LK Y PA F  ALL+SQPMGFYSPSQL+QD RRHGVEV  V +  S  D++L   A    
Sbjct: 800  LKNYEPACFLAALLDSQPMGFYSPSQLVQDARRHGVEVRPVDVTCSALDTTLEARAPDAP 859

Query: 796  --------------------AIRLGFRQVKGLKEQAMQRLVDVRSAAGFAHLSEISML-- 833
                                A+RLG R V GL E   +RL+  R+ A F    ++++   
Sbjct: 860  RMPAGTDARYADRLGNENQPAVRLGLRLVSGLGEAGAKRLLQARAQAPFTSTEDLALRAE 919

Query: 834  LDRHALELLAAADAFRLLSGHRFQSRWQLSARQASLPLFDDLPEPLKPVGTEPSLDAPNA 893
            LD   +  LAAADA   LSGHR Q  W  +A++ S  L   +P        E  L  P A
Sbjct: 920  LDGKDMAALAAADALMPLSGHRRQQVWDATAQRRSPALLRGVPI------NEQVLQLPAA 973

Query: 894  VQC--LKADYRSKGLSLGQHPMALLRIAGLLGKSLTAKALENTRHGQLVTVAGVVTGRQR 951
             +   +  DY + GL+L +HP+ALLR      K ++A+ L     GQ V   G+V GRQR
Sbjct: 974  PEGEEIVGDYAALGLTLRRHPLALLRPRLARMKLMSAEQLRALPSGQTVRACGIVKGRQR 1033

Query: 952  PGTASGVTFITLEDETGNTNLIVWMGTARAQRKPYLTSTILKVSGTVEHADG----VTHV 1007
            PGTA+G  F+TLEDETGN N+IVW     A R+P L S +L V GT +  D     V H+
Sbjct: 1034 PGTANGTIFVTLEDETGNVNVIVWSHVIEAWREPLLKSHLLAVQGTWQRDDDSGGKVQHL 1093

Query: 1008 VAGRLEDISHLLDSLKVA--SRDFH 1030
            +A   +D++ L+  L  +  SRDFH
Sbjct: 1094 IATGFKDLTPLMGRLAQSNTSRDFH 1118