Pairwise Alignments

Query, 1030 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

Subject, 1023 a.a., error-prone DNA polymerase from Pseudomonas fluorescens SBW25

 Score =  949 bits (2454), Expect = 0.0
 Identities = 529/1043 (50%), Positives = 679/1043 (65%), Gaps = 36/1043 (3%)

Query: 2    YAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDAGISLI 61
            YAELH +SN+SF RGAS   EL   A R GYSA+AITDEC++AG+V+A  AA    + LI
Sbjct: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELPLI 62

Query: 62   VGSEFRLQQGT-FVLLATSRAGYGALCRLISRGRRRAPKGEYRINLDDLLSPLPDCVLLW 120
            +GSE R++ G   VLL    +GY  LCRLI+  RRRA KG YR+ L+D   PLP  + LW
Sbjct: 63   IGSEVRIENGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLLEDFDQPLPGLLALW 122

Query: 121  RPPMPQNPGTDIAATEQHW----FATQKQLAKQLTPWQGRRYLLAEQCLEAAGSLWQRYL 176
                     +D  A+ Q W    FA +  LA  L   Q   + L EQ L  A SL     
Sbjct: 123  VAE-----DSDTQASIQ-WLRRTFAERLWLAVHLHCGQDDAHRL-EQRLNLAASL----- 170

Query: 177  MRLSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDEAEGHLCQNAEHYLRPLGS 236
                    IP VA GDV MH+  R+ L D +T IR  + + EA   L  N E +LR L +
Sbjct: 171  -------RIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDA 223

Query: 237  IHRRYPQEWIANTQKIASQCRFSMAELRYEYPAELVPAGFSASEYLAREVAKGARRRYGL 296
            +   YP   +  TQ IA +C F +++LRY YP ELVP G  A  +L      G  +R+  
Sbjct: 224  LAALYPHALLDETQAIARRCTFDLSQLRYHYPRELVPEGHDAESWLRAVTEAGIAQRWPQ 283

Query: 297  AVPAAVKRQYLAELKLIHELEYEYFFLTIYDIVRFARRKRILHQGRGSAANSVVCFCLGI 356
             V A   +Q   EL LI EL YE +FLT++DIVRFAR + IL QGRGSAANS VCF LGI
Sbjct: 284  GVDAHTLQQIHKELALISELGYESYFLTVHDIVRFARSRSILCQGRGSAANSAVCFALGI 343

Query: 357  TEVDPTRVNMLFERFISKERHEPPDIDVDFEHERREEVIQYIYRKYGRHRAALAASVITY 416
            TE+DP+  +MLFERF+SKER+EPPDIDVDFEHERREEV+QY++++YGR RAAL A V +Y
Sbjct: 344  TEIDPSLTSMLFERFLSKERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSY 403

Query: 417  RLKSAMGEVGKVLGLDRELVARLIQGIDRRDPSHPWREQLAA-----QLPSADMFGYLVQ 471
                A+ +V K LGL  + V  L     R     P  E+L       Q P       L Q
Sbjct: 404  HAAGAVRDVAKALGLPPDQVNALADCCGRWSDDAPPLERLREGGFDPQSPILRRVLTLTQ 463

Query: 472  SLLGFPRHLSQHVGGFVISAGPLAELVPVENAAMEDRTVIQWDKDDLEALGLLKVDVLAL 531
             L+GFPRHLSQH GGFVIS  PL  LVPVENAAM +RT+IQWDKDDL+A+GLLKVD+LAL
Sbjct: 464  QLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILAL 523

Query: 532  GMLTAIRKCFELISRHQ-QPFGMRSIKAEDPNVYRMLSRGDSMGVFQVESRAQTSMLPRL 590
            GML+AIR+CF+L+ RH+ + F + S+  EDP  Y M+S+ D++GVFQ+ESRAQ SMLPRL
Sbjct: 524  GMLSAIRRCFDLLRRHRNRDFSLASLPKEDPATYAMISKADTIGVFQIESRAQMSMLPRL 583

Query: 591  RPACYYDLVIQIAIVRPGPIQGDMVHPFLRRRKGLEAVTYPSEAVKAVLERTMGVPIFQE 650
            RP  +YDLVI++AIVRPGPIQG MVHP+LRRR   E  TYPS  ++ VL+RT+G+P+FQE
Sbjct: 584  RPQTFYDLVIEVAIVRPGPIQGGMVHPYLRRRNKEEETTYPSPELEVVLQRTLGIPLFQE 643

Query: 651  QVIKLAMVAAGFSGGEADALRRAMASWKHTGKLWSFEQKLLDGMAARGYSEDFARQIFRQ 710
            QV+++AMVAA +  GEAD LRR+MA+WK  G L   +++L  GM   GYSE+FA QIF Q
Sbjct: 644  QVMQIAMVAADYGPGEADQLRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEEFAAQIFEQ 703

Query: 711  IQGFGEYGFPESHSASFALLAYVSAYLKLYHPAAFCCALLNSQPMGFYSPSQLLQDVRRH 770
            I+GFG YGFPESH+ASFALL Y S +LK + PAAF CAL+NS PMGFYSP Q+LQD RRH
Sbjct: 704  IKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRH 763

Query: 771  GVEVFDVCINHSQWDSSLVK-TATGFAIRLGFRQVKGLKEQAMQRLVDVRSAAGFAHLSE 829
             +++  V +  S WD SL        AIR+G R + GL+E+  +R+   R    F+ +++
Sbjct: 764  RLQIRPVDVQASDWDCSLEPIDGAQPAIRMGLRMIAGLREEEGRRIETARERGVFSDIAD 823

Query: 830  ISML--LDRHALELLAAADAFRLLSGHRFQSRWQLSARQASLPLFDDLPEPLKPVGTEPS 887
            +     LD     LLA A A R L+ +R ++RW+++     L LF  LP P + V    +
Sbjct: 824  LDARAGLDARTQALLADAGALRALADNRHKARWEVAGVHKQLGLFAGLPSPDEAV---VA 880

Query: 888  LDAPNAVQCLKADYRSKGLSLGQHPMALLRIAGLLGKSLTAKALENTRHGQLVTVAGVVT 947
            L AP   + L+ADY + G +LG HP+ALLR      +  +++ L    HG+ V++AG+VT
Sbjct: 881  LPAPTVGEDLQADYATVGTTLGPHPLALLRTELRKRRCRSSQELMLVEHGRNVSIAGLVT 940

Query: 948  GRQRPGTASGVTFITLEDETGNTNLIVWMGTARAQRKPYLTSTILKVSGTVEHADGVTHV 1007
            GRQRPGTASGVTF+TLEDE GN N++VW   A  QR+  + S +LKV G  E    V H+
Sbjct: 941  GRQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHL 1000

Query: 1008 VAGRLEDISHLLDSLKVASRDFH 1030
            +AGRL D++ LL+ + V SRDFH
Sbjct: 1001 IAGRLTDLTPLLEGIPVRSRDFH 1023