Pairwise Alignments

Query, 1030 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

Subject, 1160 a.a., DNA polymerase III subunit alpha from Pectobacterium carotovorum WPP14

 Score =  342 bits (877), Expect = 9e-98
 Identities = 306/1096 (27%), Positives = 501/1096 (45%), Gaps = 108/1096 (9%)

Query: 2    YAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDAGISLI 61
            +  L   S+YS + G +    LV +AA LG  A+AITD  ++ G+VK +  A  AGI  I
Sbjct: 6    FVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIKPI 65

Query: 62   VGSEFRLQQGTF-------VLLATSRAGYGALCRLISRGRRRAPKGEYRINLD-DLLSPL 113
            +G++F ++            +LA + AGY  L  LIS   +R   G     +D D L   
Sbjct: 66   IGADFCVESDELGDELAHLTVLAMNNAGYQNLTLLISHAYQRG-YGAAGPTIDRDWLIEH 124

Query: 114  PDCVLLWRPPMPQNPGTDIAATEQHWFATQKQLAKQLTPWQGRRYLLAEQCLEAAGSLWQ 173
             + ++L       + G  +    Q     ++ LA     +  R YL   +        + 
Sbjct: 125  QEGLILLSGGRRGDVGRFLLRGNQA--QAEQCLAFYQEHFPQRYYLELIRTSRPDEESYL 182

Query: 174  RYLMRLSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDEAEGHLCQNAEHYLRP 233
               + L+    IP VA  +V   S       ++   I  G  LD+ +     + + Y+R 
Sbjct: 183  HAAVELATKHGIPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMRS 242

Query: 234  LGSIHRRYPQ--EWIANTQKIASQCRFSMAELRYEYPAELVPAG-FSASEYLAREVAKGA 290
               +   +    E +AN+ +IA +C  ++    Y  P    P G  S  ++L +   KG 
Sbjct: 243  EEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQ--FPTGDMSTEDFLVQCSKKGL 300

Query: 291  RRRYGLAVPAAVKR---------QYLAELKLIHELEYEYFFLTIYDIVRFARRKRI-LHQ 340
              R     P    R         +   EL +I+++ +  +FL + + +++++   + +  
Sbjct: 301  EERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 341  GRGSAANSVVCFCLGITEVDPTRVNMLFERFISKERHEPPDIDVDFEHERREEVIQYIYR 400
            GRGS A S+V + L IT++DP   ++LFERF++ ER   PD DVDF  E+R++VI ++  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDKVIDHVAE 420

Query: 401  KYGRHRAALAASVITYRLKSAMGEVGKVLGLDRELVARLIQGIDRRDPSHPWREQLAA-- 458
             YGR   +   +  T   K+ + +VG+VLG     V R I  +   DP     +  AA  
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDR-ISKLVPPDPGMTLEKAFAAEP 479

Query: 459  QLPSADMFGYLVQSLL-------GFPRHLSQHVGGFVISAGPLAELVPVENAAMEDRTVI 511
            QLP        V++L+       G  R+  +H GG VIS   + +  P+   A  +  V 
Sbjct: 480  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHPVT 539

Query: 512  QWDKDDLEALGLLKVDVLALGMLTAIRKCFELISRHQ-----QPFGMRSIKAEDPNVYRM 566
            Q+DK+D+E  GL+K D L L  LT I     +I+  +     +P  + +I  ED   + M
Sbjct: 540  QFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDIAAIPLEDKKSFDM 599

Query: 567  LSRGDSMGVFQVESRAQTSMLPRLRPACYYDLVIQIAIVRPGPIQGDMVHPFLRRRKGLE 626
            L R ++  VFQ+ESR    ++ RL+P C+ D++  +A+ RPGP+Q  MV  F+ R+ G E
Sbjct: 600  LQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659

Query: 627  AVTYPS-----EAVKAVLERTMGVPIFQEQVIKLAMVAAGFSGGEADALRRAMASWKHTG 681
            A++YP      E++K VLE T G+ ++QEQV+++A V AG++ G AD LRRAM   K+  
Sbjct: 660  AISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGK-KNPV 718

Query: 682  KLWSFEQKLLDGMAARGYSEDFARQIFRQIQGFGEYGFPESHSASFALLAYVSAYLKLYH 741
            ++        DG  +RG + + A +IF  ++ F  YGF +SHSA++AL++Y + +LK ++
Sbjct: 719  EMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 742  PAAFCCALLNSQPMGFYSPSQLLQDVRRHGVEVFDVCINHSQWDSSLVKTATGFAIRLGF 801
            PA F  A++ +          L+ +  R G+++    IN   +   +        I  G 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG---EIVYGI 835

Query: 802  RQVKGLKEQAMQRLVDVRSAAG-FAHLSEIS-----MLLDRHALELLAAADAFRLLSGHR 855
              +KG+ E  ++ +++ R+  G F  L ++        L+R  LE L  + AF  L  HR
Sbjct: 836  GAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHR 895

Query: 856  FQSRWQLSARQASLPLFDDLPEPLKPVGTEPS-------------LDAPNAVQ------- 895
                           L + LP+ LK                     DAP  V+       
Sbjct: 896  -------------AALMNSLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVP 942

Query: 896  ------CLKADYRSKGLSLGQHPMA-----LLRIAGLLGKSLTAKALENTRHGQLVTVAG 944
                   L  +  + GL L  HP+      + R AG     +  K +  T  G++ T  G
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAG----GVRLKDMHPTDRGKMTTAVG 998

Query: 945  VVTGRQRPGTASG--VTFITLEDETGNTNLIVWMGTARAQRKPYLTSTILKVSGTVEHAD 1002
            +V   +   T  G  +   TL+D +G   ++++       +       IL  SG V   D
Sbjct: 999  LVLAARVMVTKRGNRIGVCTLDDRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDD 1058

Query: 1003 --GVTHVVAGRLEDIS 1016
              G   +    L DIS
Sbjct: 1059 FSGGLKMTVRELMDIS 1074