Pairwise Alignments

Query, 1030 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

Subject, 1161 a.a., DNA-directed DNA polymerase III (polc) from Kangiella aquimarina DSM 16071

 Score =  354 bits (908), Expect = e-101
 Identities = 290/1069 (27%), Positives = 480/1069 (44%), Gaps = 83/1069 (7%)

Query: 2    YAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDAGISLI 61
            +  L   + YS +        L+A        AIA+TD+ ++ G+VK +  +V AGI  I
Sbjct: 5    FVHLKMHTEYSMVDSVVRVKPLIAHCKEQNIPAIAMTDQMNMCGLVKFYSQSVSAGIKPI 64

Query: 62   VGSEFRLQQGT-------FVLLATSRAGYGALCRLISRGRRRAPKGEYRINLDDLLSPLP 114
             G++  +Q             L  +  GY  L  LISR   +       +   + L    
Sbjct: 65   AGADLLIQNPNDEDDHFRVTALCMNNTGYLNLKYLISRAYLKNQHRGLPLAKKEWLPEFA 124

Query: 115  DCVLLWRPPMPQNPGTDIAATEQHWFATQKQLAKQLTPW----QGRRYLLAEQCLEAAGS 170
            + +++       + G  + A          Q A  L  W    + R YL  ++      +
Sbjct: 125  EGLIILSGGRQGDVGKALLA------GNMDQAASNLGFWNHHFKDRFYLELQRTGRPQEN 178

Query: 171  LWQRYLMRLSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDEAEGHLCQNAEHY 230
             +   ++ L+     P VA  DVR          +   CI  G  L +       + + Y
Sbjct: 179  EYIHQVIGLAQGASTPVVATNDVRFLHKEDFDAHEARVCINQGRVLADPRRPRDYSEQQY 238

Query: 231  LRPLGSIHRRYPQ--EWIANTQKIASQCRFSMAELRYEYPAELVPAGFSASEYLAREVAK 288
            LR    +   +    E + N+ +IA +C   M    Y  P   +P G +  +Y  +    
Sbjct: 239  LRSEAEMVELFEDIPEALENSVEIAKRCNLDMRLGEYFLPEFPIPEGMTIEQYFEKVSKD 298

Query: 289  GARRRYGLAVP------AAVKRQY----LAELKLIHELEYEYFFLTIYDIVRFARRKRI- 337
            G   R            A ++++Y      EL +I+++ +  +FL + D +++++   + 
Sbjct: 299  GLEERLDQLYDRNAENFAEIRKEYDERLQIELDVINQMGFPGYFLIVADFIQWSKNNGVP 358

Query: 338  LHQGRGSAANSVVCFCLGITEVDPTRVNMLFERFISKERHEPPDIDVDFEHERREEVIQY 397
            +  GRGS A S+V + + IT++DP   ++LFERF++ ER   PD DVDF  E R+ VI Y
Sbjct: 359  VGPGRGSGAGSLVAYAMKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDY 418

Query: 398  IYRKYGRHRAALAASVITYRLKSAMGEVGKVLGLDRELVARLIQ--------GIDRRDPS 449
            +  +YGR+  +   +  T   K+ + +VG+VL      V +L +         +++    
Sbjct: 419  VAERYGRNSVSQIITFGTMAAKAVIRDVGRVLSHPYGFVDKLAKLIPFEVGMTLEKAFEQ 478

Query: 450  HPWREQLAAQLPSADMFGYLVQSLLGFPRHLSQHVGGFVISAGPLAELVPVENAAMEDRT 509
             P   +L  +         L + L G  R+  +H GG VI+   L E  P+         
Sbjct: 479  EPELPRLYEEDEDVREMWDLARKLEGVTRNAGKHAGGVVIAPNDLEEFAPLYCDETGHNI 538

Query: 510  VIQWDKDDLEALGLLKVDVLALGMLTAIRKCFE-----LISRHQQPFGMRSIKAEDPNVY 564
            V Q+DKDD+E+ GL+K D L L  LT I    E     +  + + P  +  I  ED  V+
Sbjct: 539  VTQFDKDDVESAGLVKFDFLGLRTLTIIDWALETANAIIAKKGEDPIDIAKIDTEDQQVF 598

Query: 565  RMLSRGDSMGVFQVESRAQTSMLPRLRPACYYDLVIQIAIVRPGPIQGDMVHPFLRRRKG 624
             +L R D+  VFQ+ESR    ++ RL+P  + D++  +A+ RPGP+Q  MV  F+ R+ G
Sbjct: 599  DLLQRADTTAVFQLESRGMKDLIKRLKPNRFEDIIALVALFRPGPLQSGMVDNFINRKHG 658

Query: 625  LEAVTYPS-----EAVKAVLERTMGVPIFQEQVIKLAMVAAGFSGGEADALRRAMASWKH 679
             E V+YP      E++K +LE T G+ ++QEQV+++A V AG++ G AD LRRAM   K 
Sbjct: 659  REKVSYPDPHYQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGGADILRRAMGK-KK 717

Query: 680  TGKLWSFEQKLLDGMAARGYSEDFARQIFRQIQGFGEYGFPESHSASFALLAYVSAYLKL 739
              ++        +G    G   D A +IF  ++ F  YGF +SHSA++AL+AY +A+LK 
Sbjct: 718  PEEMEKQRSIFKEGSIKNGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVAYQTAWLKT 777

Query: 740  YHPAAFCCALLNSQPMGFYSPSQLLQDVRRHGVEVFDVCINHSQWDSSLVKTATGFAIRL 799
            +HPAAF  A+++S           ++D +  G+ +    +N  Q+  S+ +      I  
Sbjct: 778  HHPAAFMAAVMSSDMDNTDKVVTYVEDAQNSGLTITPPDVNKGQYRFSVDEEG---RIVY 834

Query: 800  GFRQVKGLKEQAMQRLVDVRSAAG-----FAHLSEISM-LLDRHALELLAAADAFRLLSG 853
            G   +KG+ E A++ +V  R A G     F   S + +   +R  LE L  A A  L+  
Sbjct: 835  GIGAIKGVGEGAIESIVKEREANGPYKDLFDFCSRVDLKKANRRTLEALIRAGAMDLIGP 894

Query: 854  HRFQSRWQLSARQASLPLF--------DDL---------PEPLKPVGTEPSLDAPNAVQC 896
            +R      L     +   F        DDL          E  + +  +P  D     Q 
Sbjct: 895  NRATLMASLDEAVKAAEQFNKSQAAGQDDLFGSVVTTTATEQHQYIRVKPWTDE----QV 950

Query: 897  LKADYRSKGLSLGQHPMALLRIAGLLGKSLT-AKALENTRHGQLVTVAGVVTGRQRPGTA 955
            L+ +  + GL L  HP+    I  +   S+T  + L+ T  G    V G++ G +   T 
Sbjct: 951  LQGEKETLGLYLTGHPIDRY-IPEIKQMSITRLRDLQPTGRGNSARVVGLIVGMRVMNTK 1009

Query: 956  SG--VTFITLEDETGNTNLIVWMGTARAQRKPYLTSTILKVSGTVEHAD 1002
             G  +  +TL+D++G  ++ V+  T    R       ++ V G   H D
Sbjct: 1010 RGDKMAILTLDDKSGRCDVTVYAETFETYRHLLSRDNVIVVDGEARHDD 1058