Pairwise Alignments

Query, 1030 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

Subject, 1029 a.a., Error-prone DNA polymerase from Alteromonas macleodii MIT1002

 Score =  979 bits (2530), Expect = 0.0
 Identities = 538/1048 (51%), Positives = 702/1048 (66%), Gaps = 40/1048 (3%)

Query: 2    YAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDAG--IS 59
            Y+EL   SNYSFL GAS P ELV  A+ LGY A+AITDECSVAGVV+A       G  I+
Sbjct: 3    YSELFCQSNYSFLCGASSPAELVTTASFLGYDALAITDECSVAGVVRAFDEIKHQGLPIT 62

Query: 60   LIVGSEFRLQQG-TFVLLATSRAGYGALCRLISRGRRRAPKGEYRINLDDLLSPLPDCVL 118
            LIVGS F      +FVLL  ++A Y  LCR+I+  RRR+ KGEY++   DL + +  C  
Sbjct: 63   LIVGSYFVFDDTLSFVLLCPNKAAYSELCRIITNARRRSDKGEYQLAEWDLRT-IRHCKF 121

Query: 119  LWRPPMPQNPGTDIAATEQHWFATQKQLAKQLTPWQGRRYLLAEQCLEAAGSLWQRYLMR 178
            +W P   +       A ++HW A   Q    +  + G     A++ L+        +   
Sbjct: 122  IWLPSGKE-------AKDKHW-AEWLQKHPSIDAYIG-----AQRLLDGRDHHRFAHYNH 168

Query: 179  LSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDEAEGHLCQNAEHYLRPLGSIH 238
            L      P +A   V MH A R PL  VL  I +   +D+       NAE  LR +  I 
Sbjct: 169  LQSAYPFPVIACTGVLMHHADRLPLQHVLHAINVHTSVDKIGRDALSNAERSLRTVQKIK 228

Query: 239  RRYPQEWIANTQKIASQCRFSMAELRYEYPAELVPAGFSASEYLAREVAKGARRRYGLAV 298
            + YP++WIANT  +A    FS+ ELRY YPAELVP G++ + YL   V  G + R+   +
Sbjct: 229  KLYPEKWIANTNALAHAFTFSLEELRYHYPAELVPEGYTPTSYLRERVEAGIKVRFPEGI 288

Query: 299  PAAVKRQYLAELKLIHELEYEYFFLTIYDIVRFARRKRILHQGRGSAANSVVCFCLGITE 358
               +++    EL LI E EYEYFFLTIYDIV+FA+R+RIL+QGRGSAANSVVC+CL IT 
Sbjct: 289  TPDIRQTIEKELTLIAEQEYEYFFLTIYDIVQFAKRQRILYQGRGSAANSVVCYCLEITA 348

Query: 359  VDPTRVNMLFERFISKERHEPPDIDVDFEHERREEVIQYIYRKYGRHRAALAASVITYRL 418
            VDP ++++LFERFISKER+EPPDIDVDFEH+RREEVIQYIY+KYGR R A+AA+VI YR 
Sbjct: 349  VDPRQISVLFERFISKERNEPPDIDVDFEHQRREEVIQYIYQKYGRERTAIAATVICYRF 408

Query: 419  KSAMGEVGKVLGLDRELVARLIQGIDRRDPSHPWREQLAA-----QLPSADMFGYLVQSL 473
            KSA  +VGK LG     +  +++ I+RRD   PW+ QLA      + P       L ++L
Sbjct: 409  KSAFKDVGKALGFSESQLDFVVKQINRRDSVIPWKSQLAGLGLNPEEPRVQQLITLTEAL 468

Query: 474  LGFPRHLSQHVGGFVISAGPLAELVPVENAAMEDRTVIQWDKDDLEALGLLKVDVLALGM 533
            LG PRHLSQHVGGFVISAGPL +LVPVENAAME+RT+IQWDKDD+E LGLLKVDVLALGM
Sbjct: 469  LGTPRHLSQHVGGFVISAGPLYDLVPVENAAMEERTIIQWDKDDIETLGLLKVDVLALGM 528

Query: 534  LTAIRKCFELISRHQQ-----PFGMRSIKAEDPNVYRMLSRGDSMGVFQVESRAQTSMLP 588
            L+AIR+ F LI++        PF  +    +D  V+ M+ R D++GVFQ+ESRAQ SMLP
Sbjct: 529  LSAIRRAFSLINKQYPVETSIPFITKL--GDDKQVFDMICRADTVGVFQIESRAQMSMLP 586

Query: 589  RLRPACYYDLVIQIAIVRPGPIQGDMVHPFLRRRKGLEAVTYPSEAVKAVLERTMGVPIF 648
            RL+P  YYDLV+QIAIVRPGPIQGDMVHP+L RR G E ++YPS+ V+ VL RTMGVPIF
Sbjct: 587  RLKPRRYYDLVVQIAIVRPGPIQGDMVHPYLIRRHGNETISYPSKDVEKVLSRTMGVPIF 646

Query: 649  QEQVIKLAMVAAGFSGGEADALRRAMASWKHTGKLWSFEQKLLDGMAARGYSEDFARQIF 708
            QEQVI+LAMVAAGFSGGEAD LRRAMASWK  G+++ F  KL+ GM  +GY   FA  +F
Sbjct: 647  QEQVIQLAMVAAGFSGGEADQLRRAMASWKKDGRIFEFRDKLIKGMTDKGYDSTFAHNLF 706

Query: 709  RQIQGFGEYGFPESHSASFALLAYVSAYLKLYHPAAFCCALLNSQPMGFYSPSQLLQDVR 768
             QI+GF  YGFPESHSASFA+LAYVS +LK Y P  F  ALLNS PMGFYSPSQL+QD +
Sbjct: 707  EQIKGFAGYGFPESHSASFAVLAYVSCWLKFYFPVEFYVALLNSWPMGFYSPSQLVQDAK 766

Query: 769  RHGVEVFDVCINHSQWDSSLVKTATGFAIRLGFRQVKGLKEQAMQRLVDVRSAAGFAHLS 828
            RH + V   C+N S  + SLV       I+LG + +KGL E + Q +V+ RS  G+  + 
Sbjct: 767  RHHIRVEAPCVNQSDVEHSLVVQGQEKYIQLGLKLIKGLSEASSQLIVENRSDKGYTDVE 826

Query: 829  EISML-LDRHALELLAAADAFRLLSGHRFQSRWQLSARQASLPLFDD----LPEPLKPVG 883
            ++  L L  + +E LA+ADA R +SG+R+++RW++   Q  LPLFD       + + P+G
Sbjct: 827  QLQQLSLKSNEVEALASADALRTISGNRYETRWRIMDTQTHLPLFDTDDFYADKNVTPLG 886

Query: 884  TEPSLDAPNAVQCLKADYRSKGLSLGQHPMALLRIAGLLGKSLTAKALENTRHGQLVTVA 943
              P+ +A N ++    DY S GLS+  HP++LL+    L     + +L++  +  +V V 
Sbjct: 887  ASPT-EAENLLE----DYASTGLSVNNHPISLLKKQHKLKDISWSNSLKDKTNKSVVKVL 941

Query: 944  GVVTGRQRPGTASGVTFITLEDETGNTNLIVWMGTARAQRKPYLTSTILKVSGTVEHA-D 1002
            G VTGRQ PGTA+GVTF+TLED+ GN N++VW  TARAQ++ +L + +L+V+G +E + +
Sbjct: 942  GAVTGRQAPGTAAGVTFLTLEDDIGNMNVVVWQATARAQQQTFLKAKLLQVNGIIERSKE 1001

Query: 1003 GVTHVVAGRLEDISHLLDSLKVASRDFH 1030
            GV H++AG+L D +  L+ L ++SRDFH
Sbjct: 1002 GVIHIIAGKLIDRTPWLEKLSLSSRDFH 1029