Pairwise Alignments

Query, 683 a.a., alpha amylase, catalytic region (RefSeq) from Shewanella amazonensis SB2B

Subject, 605 a.a., alpha-amylase family glycosyl hydrolase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  143 bits (361), Expect = 2e-38
 Identities = 144/543 (26%), Positives = 228/543 (41%), Gaps = 104/543 (19%)

Query: 178 RQGYGNRDVMYLITPDRFANGDKANDNLPGFDDKPSNPVYSEPGNSRDNARHGGDLAGIE 237
           RQ     +V+Y + PDRFANGD  ND+     D+  +    +P ++  +  HGGDLAG+ 
Sbjct: 43  RQRLPQDEVIYFLLPDRFANGDATNDHGGYAADRLKSGF--DPADT--DFYHGGDLAGVT 98

Query: 238 HRLDYLNDLGVTQLWLNPLLENRQ-------PAYSYHGYAITDFYQIDARFGSNAQYQAL 290
            +LDY+  LG T +WL P+ +N+           ++HGY ITDF  +D  FG  A  +AL
Sbjct: 99  QQLDYIQGLGATAVWLAPVFKNKPVQSHGGYTGAAHHGYWITDFTAVDPHFGDEAAMRAL 158

Query: 291 VRKAADRGLGVIMDVVLNHMG------------------SGHPW-----MQDLPFNDWVN 327
           V  A  RG+ V +D+V NH                    + +P+     +   P N+  +
Sbjct: 159 VEAAHARGMKVYLDIVANHTADVIQYRECPEGRCAYRSRADYPYTRRGGVDGAPINEGFD 218

Query: 328 PRSMHTSHRRTAVQDPYAAPKDAAAFTDGWFVD-----------------------SMPD 364
            R      +      PY    +  A    W  D                        + D
Sbjct: 219 GRDFSRLTQPDYAYTPYVPAGEENAKVPAWLNDPIHYHNRGDSTFTGESSLDGDFAGLDD 278

Query: 365 LNQRNPHLATYLIQNNLWWIEYAGLSGLRIDTWSYSDKHFLKAFSEAIMAE-----YPHF 419
           L   +P +   +I     WI+  G+ G RIDT  + +  F +AF  A++A       P+F
Sbjct: 279 LLTEDPVVIQGMIDIFGGWIDKYGIDGFRIDTARHVNPGFWQAFIPAMIARAEAKGIPNF 338

Query: 420 NMVGEEWSGNPAVVSYWQRAKQNPDGYQTSLPGLMDFPLYEVLLQAVN-EEERWGT-GLI 477
           ++ GE +  +PAV + + R     DGY    P ++DFP  +   QA +    + GT GL 
Sbjct: 339 HIFGEVYDPDPAVTARFTRV----DGY----PAVLDFPFQK---QATDVAAGKVGTDGLA 387

Query: 478 RLYEALANDMLYPH----AQNLVLFEGNHDTNRLYSLL---------GRDMNKFKLALAY 524
           +L++A   D +Y      A  L  F GNHD  R+   +            + + KLA A 
Sbjct: 388 KLFDA---DTIYDKGAETAAILPTFLGNHDMGRVGFFVKQANPNADDAEVLARIKLAHAL 444

Query: 525 VLLSNRVPQIFYGTEFAMQSPVEGRNDGAVRADM-PGFGKAGFSKSDIDAMAGDSKT--- 580
           ++ S  VP ++YG E   Q        G  R DM P       +++ +        T   
Sbjct: 445 MMFSRGVPTLYYGDE---QGFAGAGGYGNSRQDMWPSRTPVYANETPVGGRQPAYSTDAP 501

Query: 581 AFEFIRALLHFRKTSDAVHRGKLV--HFVPQSGLYVQLRQAPDDNPDAKNLMVIFNKNKD 638
            ++ I  +   R    A+ RG+ V   +  + GL+   R       D   ++ +FN +  
Sbjct: 502 LYQAIAEMTRIRAEEPALRRGRQVVRAYGDKPGLFALSRV----GEDGSEILALFNSSTT 557

Query: 639 SVS 641
            V+
Sbjct: 558 PVA 560



 Score = 25.8 bits (55), Expect = 0.006
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 165 PYELKARAPGSKERQGYGNRDVMYLITPD----RFANGDKANDNLPGFDDKPSNPVYSEP 220
           PY  +    G+   +G+  RD   L  PD     +    + N  +P + + P +  Y   
Sbjct: 201 PYTRRGGVDGAPINEGFDGRDFSRLTQPDYAYTPYVPAGEENAKVPAWLNDPIH--YHNR 258

Query: 221 GNSRDNARHG--GDLAGIEHRLDYLNDLGVTQLWLNPLLENRQPAYSYHGYAITDFYQID 278
           G+S         GD AG++   D L +  V    +  +       Y   G+ I     ++
Sbjct: 259 GDSTFTGESSLDGDFAGLD---DLLTEDPVVIQGMIDIFGGWIDKYGIDGFRIDTARHVN 315

Query: 279 ARFGSNAQYQALVRKAADRGL 299
             F   A   A++ +A  +G+
Sbjct: 316 PGFW-QAFIPAMIARAEAKGI 335