Pairwise Alignments

Query, 366 a.a., LacI family transcription regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 339 a.a., Ribose operon repressor from Pseudomonas sp. RS175

 Score =  142 bits (358), Expect = 1e-38
 Identities = 104/338 (30%), Positives = 170/338 (50%), Gaps = 17/338 (5%)

Query: 27  ATSIDIAYRAGVSQSTVSRALRDSPLVSPETKEKIRAIARELNYKVDKNASNLRTQNSHT 86
           AT  D+A  AG+S +TVS  +  +  VS E + K+      L+Y     A +L+ + + T
Sbjct: 2   ATIKDVAALAGISYTTVSHVVNKTRPVSKEVRLKVEEAIARLDYVPSAVARSLKAKTTAT 61

Query: 87  LALLLCEDPTNDDSLINPFFLSMLGSITRATAKQGYDLLVSFQQLSSDWHADYED---SN 143
           + LL+        + +NP+F  +   I     + GY +++     + D    Y       
Sbjct: 62  IGLLV-------PNSLNPYFAELARGIEDYCERNGYCVILCNSDDNPDKQRSYLRVLLEK 114

Query: 144 KADGIILLGYGDFVDYEHKLERLLAQNTHFVIWGAEHNKSTVASVGCDNQQGGLIATEHL 203
           + DG+I+   G  V      E L +  T  VI     +      V  D++ G  +AT HL
Sbjct: 115 RIDGLIVASAGGDVGLA---EGLASVRTPMVIVDRGLDGLEADLVRIDHEYGAYLATRHL 171

Query: 204 LSLGRKSVAFLGDASSHSPEFRDRYLGHVRALKDAGLVADKRCQVDAISTESAGFDAANK 263
           L LG + +AF+G  +  S   + R  G+ RAL++AG+       +D+  T + G+ AA  
Sbjct: 172 LELGHRDIAFIGGPADTSVA-QMRQAGYCRALEEAGIELATGRMLDSDFTSTGGYRAAAS 230

Query: 264 LIRKGAQFDAIFAASDLIAIGAIRALKEAGLRVPEDVAVVGYDDIPVASFANPPLTTIKQ 323
           L+       AIFAA+D+I IG +RA  E  +RVP +++V+G+DDI ++ +  P LTT+ Q
Sbjct: 231 LLEHQPP-SAIFAANDMIGIGVLRAAAERNVRVPSELSVIGFDDIQMSRYVYPALTTVGQ 289

Query: 324 NTQLAGEMLVESLLKLIHGEAV--PPRLIPTSLVVRKS 359
           +    GEM  E LL+ I   A+    R++  S+V+R+S
Sbjct: 290 SILQLGEMAAEVLLRRIATPALATEQRIVTPSIVLRES 327