Pairwise Alignments

Query, 1289 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella amazonensis SB2B

Subject, 1300 a.a., ATP-dependent RNA helicase HrpA from Escherichia coli ECRC100

 Score = 1524 bits (3945), Expect = 0.0
 Identities = 769/1275 (60%), Positives = 978/1275 (76%), Gaps = 5/1275 (0%)

Query: 20   DVARIRRELRDIERLGDETAKAAAFERLAERAEAAKAKVDARLSARPRIHYPDNLPVSQK 79
            D  R  R L  ++++ +  A+ A F+ +A+  + A  KV  R +ARP I YPDNLPVSQK
Sbjct: 23   DRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQK 82

Query: 80   RDDIAEAIAKHQVVIVAGETGSGKTTQLPKICLELGRGSRGLIGHTQPRRLAARSVATRV 139
            + DI EAI  HQVVIVAGETGSGKTTQLPKIC+ELGRG +GLIGHTQPRRLAAR+VA R+
Sbjct: 83   KQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRI 142

Query: 140  ADELQSPLGEAVGFKVRFADAINENSYIKLMTDGILLAELSSDKYLNQYDTLIIDEAHER 199
            A+EL++  G  +G+KVRF+D +++N+ +KLMTDGILLAE+  D+ L QYDT+IIDEAHER
Sbjct: 143  AEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHER 202

Query: 200  SLNIDFILGYLKQLLPRRPDLKVIITSATIDVDRFSTHFDKAPVIEVSGRTYPVETRYRP 259
            SLNIDF+LGYLK+LLPRRPDLK+IITSATID +RFS HF+ AP+IEVSGRTYPVE RYRP
Sbjct: 203  SLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRP 262

Query: 260  LVKD-DEPDLDLMDGIFEAVDELMAEGPGDILIFMNGEREIRDTAEQLSRRQYRDTEVLP 318
            +V++ D+ + D +  IF+AVDEL  E PGDILIFM+GEREIRDTA+ L++   R TE+LP
Sbjct: 263  IVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTEILP 322

Query: 319  LYARLSYGEQSKVFKSHTGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSYRTKVQR 378
            LYARLS  EQ++VF+SH+GRRIVLATNVAETSLTVPGI+YVIDPGTARISRYSYRTKVQR
Sbjct: 323  LYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQR 382

Query: 379  LPIEPISQASANQRQGRCGRVGPGICIRLYEETDFLSRPEFTDPEILRTNLASVILQMLA 438
            LPIEPISQASANQR+GRCGRV  GICIRLY E DFLSRPEFTDPEILRTNLASVILQM A
Sbjct: 383  LPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTA 442

Query: 439  IGLGDIKGFPFIQPPDERHIKDGFLLLEELQAIKLKKGLP--QMTPLGRKLAHVPLDPRL 496
            +GLGDI  FPF++ PD+R+I+DG  LLEEL AI   +     ++TPLGR+L+ +P+DPRL
Sbjct: 443  LGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRL 502

Query: 497  ARMVIEAADRGALHEALVVTSALSIQDPRERPLEKKQAADEAHSRFADKDSDFVSLLNLW 556
            ARMV+EA   G + EA+++TSALSIQDPRERP++K+QA+DE H RF DK+SDF++ +NLW
Sbjct: 503  ARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLW 562

Query: 557  NYIKEQQKALSASQFRKLCKQEYLAYLRVREWQDLYTQVRQSVHELKLKLNSVPADYDSL 616
            NY+ EQQKALS++ FR+LC+ +YL YLRVREWQD+YTQ+RQ V EL + +NS PA+Y  +
Sbjct: 563  NYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREI 622

Query: 617  HRALLSGLLSHVGFKD-NNNEYLGARNRRFYVFPGSPLAKKGPKWIVAAELTETSRLFAR 675
            H ALL+GLLSH+G KD +  EY GARN RF +FPGS L KK PKW++ AEL ETSRL+ R
Sbjct: 623  HIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGR 682

Query: 676  GCAKIEPEWLEELAAHLIKKQHNEPQFEANQGAVVAFENQVLYGLTVVNRRKVQYGPINA 735
              A+I+PEW+E +A HLIK+ ++EP +E  QGAV+A E   +YGL +V  RKV Y  I+ 
Sbjct: 683  IAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQIDP 742

Query: 736  IEAREIFIRSALAEGQLKTREAFFLHNQKLLEEVESLEHKSRRRDILVDEQVLFDFYNER 795
               RE+FIR AL EG  +TR AFF  N KL  EVE LEHKSRRRDILVD++ LF+FY++R
Sbjct: 743  ALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFYDQR 802

Query: 796  LPEGIYNAPKLFSWWKEARRKQPELLNFNEDMLYARQTGHISKLDFPDVWHQGNLSFALS 855
            +   + +A    SWWK+  R+ P+LLNF + ML       ISKLD+P+ WHQGNL   LS
Sbjct: 803  IGHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKLRLS 862

Query: 856  YHFEPGAEDDGVSVHIPVALLNQVEDSGFDFLVPGLREEKCIALIKSLPKSLRRNFVPAP 915
            Y FEPGA+ DGV+VHIP+ LLNQVE+SGF++ +PGLR E  IALIKSLPK +RRNFVPAP
Sbjct: 863  YQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFVPAP 922

Query: 916  DYARAAVQAMS-LDLPLLESLSKQLLRMTGTRVSGEDFVLTELPKHLLMHFKIEDDHGKL 974
            +YA A +  ++ L+LPLL+SL ++L RMTG  V  ED+   ++P HL + F++ DD  K 
Sbjct: 923  NYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDKNKK 982

Query: 975  VGEGRDLDALKASLQGVVAKAIRQVAKSGIEQAGLTEWSIDDLPAQFQRKKGNYEVKAFP 1034
            + EGR L  LK +L+G V + +  VA  GIEQ+GL  WS   LP  +++K+GNY+VKA+P
Sbjct: 983  LKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVKAWP 1042

Query: 1035 ALVDEKESVAVKLFDDEHQAQKAHAQGVRRLLLINIPSPVKHLQQALPNKAKLAMYFNPF 1094
            ALVDE++SVA+KLFD+  + ++A   G+RRLLL+NIPSP+K+L + LPNKAKL +YFNP+
Sbjct: 1043 ALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYFNPY 1102

Query: 1095 GQVQLLIEDIIDAAVAQILDEQRLEVRTKAGFDVARDAVRADLNSVAEQISLKVEQILTL 1154
            G+V  LI+D I   V Q++D     V T+ GF    + VRA+LN     I+ +VEQILT 
Sbjct: 1103 GKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQILTA 1162

Query: 1155 HNQIKKRLKGKISLDIAFAMSDIQTQLDRLVYKGFVADCGHARLSDIIRFLKAIEHRLEK 1214
               I KRLKG++ + +A  +SDI+ Q+  LVY+GFV   G  RL D +R+L+AIE RLEK
Sbjct: 1163 VFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKRLEK 1222

Query: 1215 LPVDPVRDKLQLLSIHKVEQALEAQLAKVPKSQPVPEHLLEARWLIEELRVSLFAQVLGT 1274
            L VDP RD+ Q+L +  V+QA +    K+P ++   E + E RW+IEELRVS FAQ LGT
Sbjct: 1223 LAVDPHRDRAQMLKVENVQQAWQQWFNKLPPARREDEDVKEIRWMIEELRVSYFAQQLGT 1282

Query: 1275 SVPISEKRVLLHIQQ 1289
              PIS+KR+L  ++Q
Sbjct: 1283 PYPISDKRILQAMEQ 1297