Pairwise Alignments

Query, 1297 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1362 a.a., Inner membrane component of TAM transport system from Variovorax sp. SCN45

 Score =  120 bits (302), Expect = 6e-31
 Identities = 140/519 (26%), Positives = 218/519 (42%), Gaps = 68/519 (13%)

Query: 833  LSAKASLSPETLTADLNLRSSRLATLDSRVEIAV-----TPDRALGGYIHLDRIQLEALR 887
            L A+      +LT D        A +D+RV+         PD  LGG I      L    
Sbjct: 851  LDAQGDAVRASLTWDSERAGKINADIDTRVQQRAGGWQWAPDAPLGGTIKASLPNLGVWS 910

Query: 888  EFLPQLDTLQGEISSELTLAGTLMSPEVSGNLA--------------LANGAFSASANPT 933
               P    + G + +  TL+G    P  +G L               L +G   AS N  
Sbjct: 911  MLAPPGWRIAGTLDAAATLSGNRAVPRWNGTLGADKLALRAPVEGLDLRDGRLRASLNGE 970

Query: 934  LISDVDMLLA--------FAGQQASLNGSWVMGDGKGGI---EGSLAW--PDGQFSG-EL 979
             +   +  L          AGQ  + + +       GG     G L+W    G  SG  +
Sbjct: 971  RVEITEFTLKGGAGSSARIAGQSGNRSTAASEARSDGGTLSATGDLSWGPASGTASGVRM 1030

Query: 980  AVKGD--KLAVIVPPMALLDVSPDVTLTFDAAMLDLKGSVNIPTGNIKIVQLAEGGVAVS 1037
            A++G    L V+V     + +S D+    D     ++G +   T    I+   E   ++ 
Sbjct: 1031 AMQGQLRALRVLVRTDRQVTLSGDLQAKLDNGQFTVRGKLK--TDRAVIILPDETAPSLG 1088

Query: 1038 PDVVF-----DDSIAEAEQKTSPYG-------VTAD-----LNIRVGDQVKIEGMGLKGR 1080
             DVV      D   AEA ++ S           TA      +N  +GD   ++G G+  R
Sbjct: 1089 SDVVVRSAAKDREAAEAAKRESERADAQAAKPQTAKPPDIVVNFDLGDDFAVQGRGITTR 1148

Query: 1081 LDGTLRLQQQAFK-PPLLFGDVKVLSGSYKFMGQTLKIPKGEVQFVGPPQLPNLNIEAIR 1139
            L+G L ++      PP + G+VK + G Y+  GQ L +  G  +F GP   P L+I AIR
Sbjct: 1149 LEGDLEIRSTRLNAPPRITGEVKTVKGQYRAYGQQLDVETGVARFNGPFDNPALDILAIR 1208

Query: 1140 EIKDEDLIAGVRITGTGMAPEVTLFSNPSKEQAEILSYILKGKGFASNGSGDNNALMMGA 1199
                +   AGV+ITGT  +P V L+S P+   AE LS+++ G+  AS  SG  +AL+  A
Sbjct: 1209 PNLSQR--AGVQITGTAQSPRVKLYSEPALSDAETLSWVILGR--ASATSGGESALLQQA 1264

Query: 1200 ALSLSSSLSGGAIGNIGSTATSL-VEKFGFSNVQLDTN-DEGRVAISGYIGENLMVKYGV 1257
            ALSL   + G   G  GS A+   +++ GF       +  E  V +   + ++  + Y  
Sbjct: 1265 ALSLLGKIGGSGSG--GSLASRFGLDELGFKGPGSGGDLRESAVTLGKRLSKDFYITYER 1322

Query: 1258 GVFNPGYEMTVRYYLLSQLYLETVSGTVGQS--LDIYYS 1294
             +      + + Y L ++L   T+ G  GQ+  LD+ Y+
Sbjct: 1323 SIGGTFGTLFIFYDLTTKL---TLRGQAGQTSGLDLIYT 1358