Pairwise Alignments

Query, 1297 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1223 a.a., translocation/assembly module TamB from Pseudomonas fluorescens SBW25

 Score =  368 bits (944), Expect = e-105
 Identities = 354/1309 (27%), Positives = 581/1309 (44%), Gaps = 160/1309 (12%)

Query: 48   LLFLVLLAL--VLGTPFGARIAVSLAASLVPNFSASYVSGTINRDLALSDIRWSMDGIAV 105
            LL  +LLAL  VLGT  G+R A+      VP  S  +  G +    +   + W  D   V
Sbjct: 14   LLGGLLLALWAVLGTQAGSRWALGR----VPGLSVEHFQGHLGGQWSADHVLWQQDSSRV 69

Query: 106  EGKALLVEWQPSCLLAKGLCVQNLSLDGLALVIETDKLPKGESEPAP-ATEKLILPFSIS 164
            E +A   +W P+CLL   LC+  L ++ ++L       P  E    P A  +L LP +I 
Sbjct: 70   ELQAPQWDWSPACLLRMTLCIDRLDVEQVSLQFP----PSTEESSGPIALPELKLPLAIQ 125

Query: 165  LDKAQLTSVDVRVDTMKFGADY----LMAAAKWQEDGLKVDELQSRGLQVFIPIPGEADT 220
            L        DVRV ++ F        L  AA W   GL++D +                 
Sbjct: 126  LG-------DVRVGSLLFNGSEELKGLQLAAHWTAAGLQIDSVH---------------- 162

Query: 221  GAQGSTITSDNTAMDSAAPTE--GSWPLASLPTIALPMNLQLLKADLTDTHLAILGEDEV 278
                  +  D   +D A   +  G WPL++   ++LP              +A+  + ++
Sbjct: 163  ------VQRDGLVLDLAGLLQPIGDWPLSASGNLSLPY-----APGGAPWQVALNVDGDL 211

Query: 279  ISRLLLGADFEG---SALT--LQELKLEHPEAELELKGT-VDLSADYPMALKLN-----V 327
            +  L L AD  G   + LT  LQ L +E+  A+L L       SAD P  L+LN      
Sbjct: 212  LKTLKLNADSSGYLPAKLTGELQPL-VENLPAQLHLTADGFKPSADLPDTLQLNQLDLTA 270

Query: 328  NTHSPSRFPDIGEQQLQLDVNGNLSQLTLKVQAKGTLNFELDAGAALTNPEVPFTLTL-- 385
                 S +  +G+  L  +       L  KV AKG     LD  A      +  T  L  
Sbjct: 271  KGDLNSGYQLLGKAVLPAEKGPVDLLLQGKVDAKGAQIAGLDLNAG-DKQSLKLTAQLDW 329

Query: 386  -----SKANVGW--------------PLQAPEYQGQELSVVASGNLNAQQASING----- 421
                 ++A + W              P  A      E+S      L   +A ++G     
Sbjct: 330  QQGFSAEAKIDWLDFPWHRLYPVIDEPQVALRTFNGEISYKDGNYLGNLKADLDGPAGKF 389

Query: 422  NVITPFHTPLLLNAVLSHQAQSLEITEAAVSGEPGNIHLSGTLNYADGLDWRAGVSFDKL 481
            NV+TPF          S   + + + E  ++   G       L +ADG+ W   +    L
Sbjct: 390  NVVTPF----------SGDLKQIFLPELKLTAGQGRAEGHLNLQFADGIAWDTALDLSAL 439

Query: 482  TPSALVLPEGVTLPKGSLDGAFETSGTFETRGTVKNQWQISLSQADIHGELAGFPVTLTG 541
             P+  V      LP G+L G   + G F      KN+     +  D+ G L G    L  
Sbjct: 440  NPAYWV----AELP-GTLAGPLRSKGEF------KNEHLKLNADLDLKGRLRGQTAVLAA 488

Query: 542  DVT-VNEKLHLSAQDFLLTAMGAKLTLNGNVEDDWDLQGLILAPDLSLLAEGLNGKFMAN 600
                  E+  L+  D  L     ++  +G+++     Q  I    L+ L   L G+    
Sbjct: 489  KADGAGEQWTLANLDIRLG--DNRINGSGSLQQRLAGQIDIKLARLAQLWPQLRGQVNGR 546

Query: 601  LDVSGSNKDPLVNLQAQGEAIKFGTTQLESLAIKGLYQPFAKHEFALSLKGSALQLGSRK 660
            LDV+GS K P   L  +G+ + F   +L+SL +        + +  + LKG+ +Q G  +
Sbjct: 547  LDVAGSLKAPQGKLGLKGQQLAFADNRLQSLTLDASLDNAQRAK--IDLKGNGIQSGDTQ 604

Query: 661  LESVTLGAKGDINKQKLRAESFGD-IRLDTVVESQFDEKTQLIEASVTRFDLGSEFGDWG 719
            + ++T  A+GDI +QK++ +  G  ++L   ++   D+        +   D+ +   DW 
Sbjct: 605  VGTLTASAQGDIQQQKVQLDLVGPLVKLALALDGTLDKGNW--RGRLASGDVQAGGQDWK 662

Query: 720  LSQDLHLTWELASNSGTLNEACFTQGNNALC------LPRPATLGSTGDVAISFRGEPGA 773
            L     +   LA    T    C+  G  +LC      +P P        +    +  P  
Sbjct: 663  LQAPAKIE-RLADGKLTFAAHCWVSGPASLCGEDQRLMPEPK-------LRYHLKQFPID 714

Query: 774  IIDKLLPTNMDWKGKASLDAAVDWSPKRKPAGELSLVFEPGSVTLLRPKGKVVEVGFEAL 833
             +   LP +  W+GK + D  +D  P   P G +S V   G +  ++ K + ++  ++ L
Sbjct: 715  SLAAFLPKDFAWQGKLNADLQLDL-PDSGPKGLVS-VDASGGILRVKDKDQWLDFPYDTL 772

Query: 834  SAKASLSPETLTADLNLRSSRLATLDSRVEIAVTP-DRALGGYIHLDRIQLEALREFLPQ 892
              + +L+P+ +   LN R  +L  L  + +I   P ++ + G   L  + L   R F+P 
Sbjct: 773  KLETTLNPKRIDTQLNFRGGKLGELMLQAQINPLPKNKPIIGNFSLVGLDLAVARPFVPM 832

Query: 893  LDTLQGEISSELTLAGTLMSPEVSGNLALANGAFSASANPTLISDVDMLLAFAGQQASLN 952
            ++TL G+++    ++G L++P+V+GN+ L  G  +    P  +  +++    AG+   LN
Sbjct: 833  VETLSGKLNGNGRISGGLLAPQVNGNVNLVGGEIAGPELPISLEGLNVQALIAGESVQLN 892

Query: 953  GSWVMGD-GKGGIEGSLAWPDGQFSGELAVKGDKLAVIVPPMALLDVSPDVTLTFDAAML 1011
            G W  G  G+G ++G + W       +L+++G +L V V P A+L+V+PD+ ++     L
Sbjct: 893  GGWRSGKAGQGSLKGQIDWGQA-LVVDLSLQGSQLPVTVEPYAVLEVAPDLKISLKNDKL 951

Query: 1012 DLKGSVNIPTGNIKIVQLAEGGVAVSPDVVFDDSIAEAEQKTSPYGVTADLNIRVG-DQV 1070
             + G V+IP G+I + +L    V VS D V   S  + E+   P  +  D+++ VG D++
Sbjct: 952  AVAGKVHIPRGDITVRELPPSTVKVSDDTVIIGS--QTEEGKPPMAMAMDIDVVVGEDKL 1009

Query: 1071 KIEGMGLKGRLDGTLRLQQQAFKPPLLFGDVKVLSGSYKFMGQTLKIPKGEVQFVGPPQL 1130
               G GL  ++ G + +           G++ +  G Y+  GQ L + +  + F GP   
Sbjct: 1010 NFSGFGLTAKVQGQVHIGDNLDTR----GELWLNDGRYRAYGQRLDVRRARLLFAGPLDQ 1065

Query: 1131 PNLNIEAIREIKDEDLIAGVRITGTGMAPEVTLFSNPSKEQAEILSYILKGKGFASNGSG 1190
            P L+IEAIR  K +D++AG+R++G+   P   +FS P+  Q + LSY++ G+  +S  +G
Sbjct: 1066 PYLDIEAIR--KTDDVVAGIRLSGSAEQPTTQIFSEPAMSQEQALSYLVLGRPLSS--TG 1121

Query: 1191 DNNALMMGAALSLSSSLSGGAIGNIGSTATSLVEKFGFSNVQLDTNDEGR---VAISGYI 1247
            ++N ++  AAL L      G +G+ G T + L  K G  +  LDT   G    V  SG I
Sbjct: 1122 EDNNMLAQAALGL------GLMGSAGVT-SDLANKLGIQDFDLDTQGSGNNTAVVASGKI 1174

Query: 1248 GENLMVKYGVGVFNPGYEMTVRYYLLSQLYLETVSGTVGQSLDIYYSFD 1296
             E L ++YGVGVF P   + +RY L  ++YLE  SG V  SLDI+Y  D
Sbjct: 1175 TEKLSLRYGVGVFEPASTIALRYLLSKKVYLEVASG-VASSLDIFYKRD 1222