Pairwise Alignments

Query, 1297 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1255 a.a., translocation/assembly module TamB from Erwinia tracheiphila SCR3

 Score =  429 bits (1104), Expect = e-124
 Identities = 339/1287 (26%), Positives = 594/1287 (46%), Gaps = 65/1287 (5%)

Query: 37   KLVTRLVVYIPLLFLVLLALVLGTPFGARIAVSLAASLVPNFSASYVSGTINRDLALSDI 96
            K++  +V+++ LL   +  L+  TP G  + ++ AA  VP  +   V G   RDL +S +
Sbjct: 6    KVLIGIVIFLLLLLSGVTLLIATTP-GLHLLLNGAARWVPGLAIKQVQGGW-RDLRVSGL 63

Query: 97   RWSMDGIAVEGKALLVEWQPSCLLAKGLCVQNLSLDGLALVIETDKLPKGESEPAP---A 153
            ++ M GI V      +  Q  CL     CV  L+L  + + +++ K+      P      
Sbjct: 64   QYEMPGIKVNVGEFHLAAQLGCLRRSAFCVDELALKDVQVTVDSKKMVPAAPTPQEENNG 123

Query: 154  TEKLILPFSISLDKAQLTSVDVRVDTMKFGADYLMAAAKWQEDGLKVDELQSRGLQVFIP 213
            T ++  P+ ++L +  L +++V VD          +   WQ+  L +     +GL + +P
Sbjct: 124  TGEVSTPYPVTLRQLTLHNINVTVDDTAISLADFTSGIHWQQRALTLTPTHIQGLLIALP 183

Query: 214  IPGEADTGAQGSTITSDNTAMDSAAPTEGSWP-------LASLPTIALPMNLQLLKADLT 266
                  T A    I          AP   +         L  LP   +P+++ + +  + 
Sbjct: 184  ----KATRAADKQIVQPKVQQPQEAPLGETLKALFAKPLLPELPDFRMPLDVDIQQ--IL 237

Query: 267  DTHLAILGEDEV-ISRLLLGADFEGSALTLQELKLEHPEAELELKGTVDLSADYPMALKL 325
               L I G+ ++ I+RLL+ A    S L L+ L ++ P+ +L  +G   L+ ++P++  L
Sbjct: 238  GEQLHITGDSDILINRLLVKAKTNDSVLHLETLDVDSPQGQLNARGQATLTDNWPISFSL 297

Query: 326  NVNTHSPSRFPDIGEQQLQLDVNGNLSQ-LTLKVQAKGTLNFELDAGAALTNPEVPFTLT 384
            N    S      +  Q++++ + G   Q L L +   G L  +++A   L    +P ++T
Sbjct: 298  N----SAVNVEPLKGQKIKMTLAGGFQQQLALSLNLSGPLRAQIEAQVQLAQAGLPLSVT 353

Query: 385  LSKANVGWPLQAPE-YQGQELSVVASGNLN----AQQASINGNVITPFHTPLLLNAVLSH 439
            L    + WPL     +Q  +L    +G +     + QA++ G  I P    L L+   + 
Sbjct: 354  LQSPQLRWPLTGETAFQADDLHFSFTGKMTDYAMSLQAALKGASIPP--GTLTLDGKGNE 411

Query: 440  QAQSLEITEAAVSGEPGNIHLSGTLNYADGLDWRAGVSFDKLTPSALVLPEGVTLPKGSL 499
            Q  SL+  +  ++   G+  L+  ++++  + W +     +LT S +   +        L
Sbjct: 412  QQFSLD--KLRLAALQGHSDLTALVDWSKAISWHS-----ELTLSGINTVKQYPEWPAKL 464

Query: 500  DGAFETSGTFETRGTVKNQWQISLSQADIHGELAGFPVTLTGDVTVNEKLHLSAQDFLLT 559
            +G   TSG+          WQ+ + +  +HG +    V+  G +  N         F L 
Sbjct: 465  NGKITTSGSL-----YGGSWQVRVPELKLHGNVKQNAVSAQGVLYGNSYNQWDIPGFKLV 519

Query: 560  AMGAKLTLNGNVEDDWDLQGLILAPDLSLLAEGLNGKFMANLDVSGSNKDPLVNLQAQGE 619
                 + L G++ D  +L   I A  L     GL G  +  +   G    P +       
Sbjct: 520  LGRNNIDLKGSLGDKLNLDASIDARHLDNALPGLGGVVVGTIKGRGDLTTPQLLADLTAT 579

Query: 620  AIKFGTTQLESLAIKGLYQPFAKHEFALSLKGSALQLGSRKLESVTLGAKGDINKQKLRA 679
             +++    +  +A+KG      + +  L+L+   L+  S  +  + L A G   + +L  
Sbjct: 580  GLRWQAMSVGRVALKGDVSSGKQIQGTLALRLERLKQDSLDIARLNLDASGSEEQHQLAL 639

Query: 680  ESFG-DIRLDTVVESQFDEKTQLIEASVTRFDLGSEFGDWGLSQDLHLTWELASNSGTLN 738
               G  +    ++  +FD + Q  + ++      +  G W L+  + L +  ++ + ++ 
Sbjct: 640  SVNGKSVSGQLLLTGRFDRQAQRWQGNLNNTHFDTPVGIWRLTHAVSLDYLNSNQTVSIG 699

Query: 739  EACFTQGNNALCLPRPATLGSTGDVAISFRGEPGAIIDKLLPTNMDWKGKASLDAAVDWS 798
              C+   N  LC+P+    G +G   +       AI+   L       G  + DA V W+
Sbjct: 700  AHCWQNLNAELCIPQTIEAGPSGHAKVVLNRFDLAIVKPFLTDETKLSGVFTGDADVSWT 759

Query: 799  PKRK-PAGELSLVFEPGSVTLLRPKGKVVEVGFEALSAKASLSPETLTADLNLRSSRLAT 857
                 P G + L    G       +G  + + F+ L+   +L       +  +  ++   
Sbjct: 760  ADGALPHGRIGLKGS-GVKVEQNVQGNTLPIAFDTLNLNGALRNGKAQLNWLINIAKNGQ 818

Query: 858  LDSRVEIAVTPD-RALGGYIHLDRIQLEALREFLPQLDTLQGEISSELTLAGTLMSPEVS 916
            LD  +EIA   + R+L G ++L+R+ L  L   L Q + + G + S L L G+L  P++ 
Sbjct: 819  LDGNLEIADPQNKRSLSGSVNLNRLNLALLNPALMQGEKVAGMLESNLRLGGSLQKPQIF 878

Query: 917  GNLALANGAFSASANPTLISDVDMLLAFAGQQASLNGSWVMGDGKGGIEGSLAWPD-GQF 975
            G LAL N     S  P  ++  ++ + F G  + L+G      G+  + G   W     +
Sbjct: 879  GQLALKNADVQGSFMPVDLTSANVNMLFNGMSSILDGVVQTSRGQIALNGDADWSQLHAW 938

Query: 976  SGELAVKGDKLAVIVPPMALLDVSPDVTLTFDAAMLDLKGSVNIPTGNIKIVQLAEGGVA 1035
               +A KG+++ V VPPM  +DVSPD+       + +L G V+IP   I + Q+ E  V 
Sbjct: 939  RARIAAKGNRIRVTVPPMVRMDVSPDLAFEATPQLFNLSGRVDIPWARIVVQQVPESAVG 998

Query: 1036 VSPD-VVFDDSIAEAEQKTSPYGVTADLNIRVGDQVKIEGMGLKGRLDGTLRLQQQAFKP 1094
            VS D V+ D ++     KT+   + ++L I +GD ++++  GLK +L+G L L Q   + 
Sbjct: 999  VSSDEVLLDKNLQPVAPKTASIPINSNLVIHIGDDMRLDAFGLKAKLNGDLNLVQD-HRG 1057

Query: 1095 PLLFGDVKVLSGSYKFMGQTLKIPKGEVQFVGPPQLPNLNIEAIR--EIKDEDLIAGVRI 1152
              L G + + SG +   GQ L + KGE+QF GP   P LNIEAIR  +  ++ + AGVR+
Sbjct: 1058 LGLNGQINIPSGRFHAYGQDLTVRKGELQFSGPADQPYLNIEAIRNPDATEDSVTAGVRV 1117

Query: 1153 TGTGMAPEVTLFSNPSKEQAEILSYILKGKGFASNGSGDNNALMMGAALSLSSSLSGGAI 1212
            TG    P+V +FS+P+  Q + LSY+L+G+G   + SG ++A +  A + L  + SG  +
Sbjct: 1118 TGLADEPKVEVFSDPTMSQQDALSYLLRGQGL--DASGSDSAALTSALVGLGLAQSGQVV 1175

Query: 1213 GNIGSTATSLVEKFGFSNVQLDT---NDEGRVAISGYIGENLMVKYGVGVFNPGYEMTVR 1269
            G IG T       FG SN+ LDT    D  +V +SGY+   L VKYGVG+F+    +T+R
Sbjct: 1176 GKIGET-------FGVSNLALDTAGVGDSQQVQVSGYVLPGLQVKYGVGIFDSLATLTLR 1228

Query: 1270 YYLLSQLYLETVSGTVGQSLDIYYSFD 1296
            Y L+ +LYLE VSG V Q+LD+ Y F+
Sbjct: 1229 YRLMPKLYLEAVSG-VDQALDLLYQFE 1254