Pairwise Alignments

Query, 1297 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1259 a.a., Translocation and assembly module subunit TamB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  412 bits (1059), Expect = e-118
 Identities = 334/1291 (25%), Positives = 576/1291 (44%), Gaps = 64/1291 (4%)

Query: 35   LFKLVTRLVVYIPLLFLVLLALVLGTPFGARIAVSLAASLVPNFSASYVSGTINRDLALS 94
            L+K ++  VV + LL L  +A ++GT  G  +    A   VP      VSG   RDL LS
Sbjct: 3    LWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVPGLDIGKVSGGW-RDLTLS 61

Query: 95   DIRWSMDGIAVEGKALLVEWQPSCLLAKGLCVQNLSLDGLALVIETDKLPKGES---EPA 151
            D+R+   G+AV+   L +     CL    +C+ +L+L  + + I++ K+P  E    E  
Sbjct: 62   DVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQVNIDSKKMPPSEQVEEEED 121

Query: 152  PATEKLILPFSISLDKAQLTSVDVRVDTMKFGADYLMAAAKWQEDGLKVDELQSRGLQVF 211
                 L  P+ I+L +  L +V++++D          +   WQE  L +     +GL + 
Sbjct: 122  SGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSGLNWQEKTLTLKPTSLKGLLIA 181

Query: 212  IPIPGEADTGAQGSTITS--DNTAMDSAAPTEGSWPLASLPTIA------LPMNLQLLKA 263
            +P   E    AQ   +    +N   +     E    L S P +       LP+NL +   
Sbjct: 182  LPKVAEV---AQEEVVEPKIENPQPEEKPLGETLKDLFSRPVLPEMTDVHLPLNLNI--E 236

Query: 264  DLTDTHLAILGEDEVISR--LLLGADFEGSALTLQELKLEHPEAELELKGTVDLSADYPM 321
            +     L + G+ ++  R  LL  +  +G+   L  L ++  +  +   GT  LS ++P+
Sbjct: 237  EFKGEQLRVTGDTDITVRTMLLKVSSIDGNT-KLDALDIDSSQGIVNASGTAQLSDNWPV 295

Query: 322  ALKLNVNTHSPSRFPDIGEQQLQLDVNGNL-SQLTLKVQAKGTLNFELDAGAALTNPEVP 380
             + LN    S      +  ++L+L V G L  QL + V   G ++ +L A   L    +P
Sbjct: 296  DITLN----STLNVEPLKGEKLKLKVGGALREQLEIGVNLSGPVDMDLRAQTRLAEAGLP 351

Query: 381  FTLTLSKANVGWPLQAP-EYQGQELSVVASGNLNAQQASINGNVITPFHTPLLLNAVLSH 439
              + ++   + WP     +YQ  +L +  +G +     S+   V      P  +      
Sbjct: 352  LNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMRTAVKGLEIPPATITLDAKG 411

Query: 440  QAQSLEITEAAVSGEPGNIHLSGTLNYADGLDWRAGVSFDKLTPSALVLPEGVTLPKGSL 499
              Q + + +  V+   G   L   L++   + WR  ++ +           G+   K   
Sbjct: 412  NEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTLN-----------GINTAKEIP 460

Query: 500  DGAFETSGTFETRGTVKN-QWQISLSQADIHGELAGFPVTLTGDVTVNEKLHLSAQDFLL 558
            +   + +G  +TRG++    WQ+ + +  + G +    V + G +  N  +        L
Sbjct: 461  EWPSKLNGLIKTRGSLYGGTWQMEVPELKLTGNVKQNKVNVDGTLKGNSYMQWMIPGLHL 520

Query: 559  TAMGAKLTLNGNVE-DDWDLQGLILAPDLSLLAEGLNGKFMANLDVSGSNKDPLVNLQAQ 617
                    + G +   D +L   I AP L     GL G     + V G+ + P +     
Sbjct: 521  ELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKVRGTVEAPQLLADIT 580

Query: 618  GEAIKFGTTQLESLAIKGLYQPFAKHEFALSLKGSALQLGSRKLESVTLGAKGDINKQKL 677
               +++    +  + ++G  +   +    L ++   +      +  VTL AKG   + +L
Sbjct: 581  ARGLRWQELSVTQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNINLVTLNAKGSEKQHEL 640

Query: 678  RAESFGD-IRLDTVVESQFDEKTQLIEASVTRFDLGSEFGDWGLSQDLHLTWELASNSGT 736
            +    G+ +     +   FD K +  + +++     +  G W L++D+ L +       +
Sbjct: 641  QLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTPVGPWSLTRDIALDYRNKEQKIS 700

Query: 737  LNEACFTQGNNALCLPRPATLGSTGDVAISFRGEPGAIIDKLLPTNMDWKGKASLDAAVD 796
            +   C+   N  LC+P+    G+ G   ++      A++   +P      G  +  A V 
Sbjct: 701  IGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDLAMLKPFMPETTQASGIFTGKADVA 760

Query: 797  WSPKRK--PAGELSLVFEPGSVTLLRPKGKVVEVGFEALSAKASLSPETLTADLNLRSSR 854
            W   ++  P G ++L      VT        + V F+ L+  A L          +R + 
Sbjct: 761  WDTTKEGLPQGSITLSGRNVQVTQT-VNDAALPVAFQTLNLTAELRNNRAELGWTIRLTN 819

Query: 855  LATLDSRVEIAVTPDRA-LGGYIHLDRIQLEALREFLPQLDTLQGEISSELTLAGTLMSP 913
                D +V++     R  LGG +++    L  +     + +   G +S+ L L G + SP
Sbjct: 820  NGQFDGQVQVTDPQGRRNLGGNVNIRNFNLAMINPIFTRGEKAAGMVSANLRLGGDVQSP 879

Query: 914  EVSGNLALANGAFSASANPTLISDVDMLLAFAGQQASLNGSWVMGDGKGGIEGSLAWPDG 973
            ++ G L +       +  P  +    + + F G +++L G+     G+  + G   W   
Sbjct: 880  QLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMRSTLAGTVRTQQGEIYLNGDADWSQI 939

Query: 974  Q-FSGELAVKGDKLAVIVPPMALLDVSPDVTLTFDAAMLDLKGSVNIPTGNIKIVQLAEG 1032
            + +   +  KG K+ + VPPM  +DVSPDV       +  L G V++P   I +  L E 
Sbjct: 940  ENWRARVTAKGSKVRITVPPMVRMDVSPDVVFEATPNLFTLDGRVDVPWARIVVHDLPES 999

Query: 1033 GVAVSPDVVF-DDSIAEAEQKTSPYGVTADLNIRVGDQVKIEGMGLKGRLDGTLRLQQQA 1091
             V VS DVV  +D++   E KT+   + ++L + VG+ V+I+  GLK RL G L + Q  
Sbjct: 1000 AVGVSSDVVMLNDNLQPEEPKTASIPINSNLIVHVGNNVRIDAFGLKARLTGDLNVVQD- 1058

Query: 1092 FKPPL-LFGDVKVLSGSYKFMGQTLKIPKGEVQFVGPPQLPNLNIEAIR--EIKDEDLIA 1148
             K  L L G + +  G +   GQ L + KGE+ F GPP  P LNIEAIR  +  ++D+IA
Sbjct: 1059 -KQGLGLNGQINIPEGRFHAYGQDLIVRKGELLFSGPPDQPYLNIEAIRNPDATEDDVIA 1117

Query: 1149 GVRITGTGMAPEVTLFSNPSKEQAEILSYILKGKGFASNGSGDNNALMMGAALSLSSSLS 1208
            GVR+TG    P+  +FS+P+  Q   LSY+L+G+G  S+ S  ++A M    + L  + S
Sbjct: 1118 GVRVTGLADEPKAEIFSDPAMSQQAALSYLLRGQGLESDQS--DSAAMTSMLIGLGVAQS 1175

Query: 1209 GGAIGNIGSTATSLVEKFGFSNVQLDTN---DEGRVAISGYIGENLMVKYGVGVFNPGYE 1265
            G  +G IG T       FG SN+ LDT    D  +V +SGY+   L VKYGVG+F+    
Sbjct: 1176 GQIVGKIGET-------FGVSNLALDTQGVGDSSQVVVSGYVLPGLQVKYGVGIFDSIAT 1228

Query: 1266 MTVRYYLLSQLYLETVSGTVGQSLDIYYSFD 1296
            +T+RY L+ +LYLE VSG V Q+LD+ Y F+
Sbjct: 1229 LTLRYRLMPKLYLEAVSG-VDQALDLLYQFE 1258