Pairwise Alignments

Query, 1297 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1259 a.a., translocation and assembly module for autotransporter export, inner membrane subunit from Escherichia coli BL21

 Score =  412 bits (1060), Expect = e-119
 Identities = 331/1290 (25%), Positives = 574/1290 (44%), Gaps = 62/1290 (4%)

Query: 35   LFKLVTRLVVYIPLLFLVLLALVLGTPFGARIAVSLAASLVPNFSASYVSGTINRDLALS 94
            L+K ++  VV + LL L  +A ++GT  G  +    A   VP      V+G   RDL LS
Sbjct: 3    LWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVPGLDVGKVTGGW-RDLTLS 61

Query: 95   DIRWSMDGIAVEGKALLVEWQPSCLLAKGLCVQNLSLDGLALVIETDKLPKGES---EPA 151
            D+R+   G+AV+   L +     CL    +C+ +L+L  + + I++ K+P  E    E  
Sbjct: 62   DVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKNIQVNIDSKKMPPSEQVEEEED 121

Query: 152  PATEKLILPFSISLDKAQLTSVDVRVDTMKFGADYLMAAAKWQEDGLKVDELQSRGLQVF 211
                 L  P+ I+L +  L +V++++D          +   WQE  L +     +GL + 
Sbjct: 122  SGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSGLNWQEKTLTLKPTSLKGLLIA 181

Query: 212  IPIPGEADTGAQGSTITS--DNTAMDSAAPTEGSWPLASLPTIA------LPMNLQLLKA 263
            +P   E    AQ   +    +N   +     E    L S P +       LP+NL +   
Sbjct: 182  LPKVAEV---AQEEVVEPKIENPQPEEKPLGETLKDLFSRPVLPEMTDVHLPLNLNI--E 236

Query: 264  DLTDTHLAILGEDEV-ISRLLLGADFEGSALTLQELKLEHPEAELELKGTVDLSADYPMA 322
            +     L + G+ ++ +S +LL          L  L ++  +  +   GT  LS ++P+ 
Sbjct: 237  EFKGEQLRVTGDTDITVSTMLLKVSSIDGNTKLDALDIDSSQGIVNASGTAQLSDNWPVD 296

Query: 323  LKLNVNTHSPSRFPDIGEQQLQLDVNGNL-SQLTLKVQAKGTLNFELDAGAALTNPEVPF 381
            + LN    S      +  ++++L V G L  QL + V   G ++ +L A   L    +P 
Sbjct: 297  ITLN----STLNVEPLKGEKVKLKVGGALREQLEIGVNLSGPVDMDLRAQTRLAEAGLPL 352

Query: 382  TLTLSKANVGWPLQAP-EYQGQELSVVASGNLNAQQASINGNVITPFHTPLLLNAVLSHQ 440
             + ++   + WP     +YQ  +L +  +G +     S+   V      P  +       
Sbjct: 353  NVEVNSKQIYWPFTGEKQYQADDLKLKLTGKMTDYTLSMRTAVKGLEIPPATITLDAKGN 412

Query: 441  AQSLEITEAAVSGEPGNIHLSGTLNYADGLDWRAGVSFDKLTPSALVLPEGVTLPKGSLD 500
             Q + + +  V+   G   L   L++   + WR  ++ +           G+   K   +
Sbjct: 413  EQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTLN-----------GINTAKEIPE 461

Query: 501  GAFETSGTFETRGTVKN-QWQISLSQADIHGELAGFPVTLTGDVTVNEKLHLSAQDFLLT 559
               + +G  +TRG++    WQ+ + +  + G +    V + G +  N  +        L 
Sbjct: 462  WPSKLNGLIKTRGSLYGGTWQMEVPELKLTGNVKQNKVNVDGTLKGNSYMQWMIPGLHLE 521

Query: 560  AMGAKLTLNGNVE-DDWDLQGLILAPDLSLLAEGLNGKFMANLDVSGSNKDPLVNLQAQG 618
                   + G +   D +L   I AP L     GL G     + V G+ + P +      
Sbjct: 522  LGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKVRGTVEAPQLLADITA 581

Query: 619  EAIKFGTTQLESLAIKGLYQPFAKHEFALSLKGSALQLGSRKLESVTLGAKGDINKQKLR 678
              +++    +  + ++G  +   +    L ++   +      +  VTL AKG   + +L+
Sbjct: 582  RGLRWQELSVAQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNINLVTLNAKGSEKQHELQ 641

Query: 679  AESFGD-IRLDTVVESQFDEKTQLIEASVTRFDLGSEFGDWGLSQDLHLTWELASNSGTL 737
                G+ +     +   FD K +  + +++     +  G W L++D+ L +       ++
Sbjct: 642  LRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTPVGPWSLTRDIALDYRNKEQKISI 701

Query: 738  NEACFTQGNNALCLPRPATLGSTGDVAISFRGEPGAIIDKLLPTNMDWKGKASLDAAVDW 797
               C+   N  LC+P+    G+ G   ++      A++   +P      G  +  A V W
Sbjct: 702  GPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDLAMLKPFMPETTQASGIFTGKADVAW 761

Query: 798  SPKRK--PAGELSLVFEPGSVTLLRPKGKVVEVGFEALSAKASLSPETLTADLNLRSSRL 855
               ++  P G ++L      VT        + V F+ L+  A L          +R +  
Sbjct: 762  DTTKEGLPQGSITLSGRNVQVTQT-VNDAALPVAFQTLNLTAELRNNRAELGWTIRLTNN 820

Query: 856  ATLDSRVEIAVTPDRA-LGGYIHLDRIQLEALREFLPQLDTLQGEISSELTLAGTLMSPE 914
               D +V++     R  LGG +++    L  +     + +   G +S+ L L G + SP+
Sbjct: 821  GQFDGQVQVTDPQGRRNLGGNVNIRNFNLAMINPIFTRGEKAAGMVSANLRLGGDVQSPQ 880

Query: 915  VSGNLALANGAFSASANPTLISDVDMLLAFAGQQASLNGSWVMGDGKGGIEGSLAWPDGQ 974
            + G L +       +  P  +    + + F G +++L G+     G+  + G   W   +
Sbjct: 881  LFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMRSTLAGTVRTQQGEIYLNGDADWSQIE 940

Query: 975  -FSGELAVKGDKLAVIVPPMALLDVSPDVTLTFDAAMLDLKGSVNIPTGNIKIVQLAEGG 1033
             +   +  KG K+ + VPPM  +DVSPDV       +  L G V++P   I +  L E  
Sbjct: 941  NWRARVTAKGSKVRITVPPMVRMDVSPDVVFEATPNLFTLDGRVDVPWARIVVHDLPESA 1000

Query: 1034 VAVSPDVVF-DDSIAEAEQKTSPYGVTADLNIRVGDQVKIEGMGLKGRLDGTLRLQQQAF 1092
            V VS DVV  +D++   E KT+   + ++L + VG+ V+I+  GLK RL G L + Q   
Sbjct: 1001 VGVSSDVVMLNDNLQPEEPKTASIPINSNLIVHVGNNVRIDAFGLKARLTGDLNVVQD-- 1058

Query: 1093 KPPL-LFGDVKVLSGSYKFMGQTLKIPKGEVQFVGPPQLPNLNIEAIR--EIKDEDLIAG 1149
            K  L L G + +  G +   GQ L + KGE+ F GPP  P LNIEAIR  +  ++D+IAG
Sbjct: 1059 KQGLGLNGQINIPEGRFHAYGQDLIVRKGELLFSGPPDQPYLNIEAIRNPDATEDDVIAG 1118

Query: 1150 VRITGTGMAPEVTLFSNPSKEQAEILSYILKGKGFASNGSGDNNALMMGAALSLSSSLSG 1209
            VR+TG    P+  +FS+P+  Q   LSY+L+G+G  S+ S  ++A M    + L  + SG
Sbjct: 1119 VRVTGLADEPKAEIFSDPAMSQQAALSYLLRGQGLESDQS--DSAAMTSMLIGLGVAQSG 1176

Query: 1210 GAIGNIGSTATSLVEKFGFSNVQLDTN---DEGRVAISGYIGENLMVKYGVGVFNPGYEM 1266
              +G IG T       FG SN+ LDT    D  +V +SGY+   L VKYGVG+F+    +
Sbjct: 1177 QIVGKIGET-------FGVSNLALDTQGVGDSSQVVVSGYVLPGLQVKYGVGIFDSIATL 1229

Query: 1267 TVRYYLLSQLYLETVSGTVGQSLDIYYSFD 1296
            T+RY L+ +LYLE VSG V Q+LD+ Y F+
Sbjct: 1230 TLRYRLMPKLYLEAVSG-VDQALDLLYQFE 1258