Pairwise Alignments

Query, 606 a.a., excinuclease ABC subunit C (RefSeq) from Shewanella amazonensis SB2B

Subject, 610 a.a., excinuclease UvrABC, endonuclease subunit from Escherichia coli BL21

 Score =  719 bits (1856), Expect = 0.0
 Identities = 370/610 (60%), Positives = 455/610 (74%), Gaps = 11/610 (1%)

Query: 2   FDHKAFLKTVSSASGVYRMYDAAAEVIYVGKAKDLKKRLSSYFRTNLPNIKTQALVSNIA 61
           FD KAFLKTV+S  GVYRMYDA   VIYVGKAKDLKKRLSSYFR+NL + KT+ALV+ I 
Sbjct: 5   FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64

Query: 62  NIDVTLTHSETEALILENDYIKQYMPKYNVLLRDDKSYPYILLSGHKHPRLAYHRGAQRE 121
            IDVT+TH+ETEAL+LE++YIK Y P+YNVLLRDDKSYP+I LSG  HPRLA HRGA+  
Sbjct: 65  QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124

Query: 122 KGEYFGPYPNGGAVRESLNLMQKLFPIRQCEDAYYRARSRPCLQYQIGRCSAPCV-GKIS 180
           KGEYFGP+PNG AVRE+L L+QK+FPIRQCE++ YR RSRPCLQYQIGRC  PCV G +S
Sbjct: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184

Query: 181 DEDYDEQVRLATLFLRGKDQQVIASLVGKMEAAALAMEYEAAARYRDQIQALRKVAEQQN 240
           +E+Y +QV    LFL GKD QV+  L+ +ME A+  +E+E AAR RDQIQA+R+V E+Q 
Sbjct: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244

Query: 241 VSGQQGDMDVIGVNYASGIACFHILFIREGKIFGSRSYFPAVPDATELGEVLRAFMLQFY 300
           VS    D+DVIGV + +G+AC H+LFIR+GK+ GSRSYFP VP  TEL EV+  F+ QFY
Sbjct: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304

Query: 301 LGNEAHRSIPKEVLLGEEFEDLHELEAAMQDSLGHRLEIKTKVRADRAAFLRLANTNAAN 360
           L     R++P E+LL     D   L  ++ +  G ++ ++TK R DRA +L+LA TNAA 
Sbjct: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364

Query: 361 AVVTKLAHKSTVEQRMELLEEVLGLGAPIQRMECFDISHTMGESTVASCVVFNREGPNKG 420
           A+ +KL+ +STV QR+  L  VL L   ++RMECFDISHTMGE TVASCVVF+  GP + 
Sbjct: 365 ALTSKLSQQSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423

Query: 421 EYRRYNISGITGGDDYAAMAQALSRRFDKIERTGKVPDVLFIDGGLGQLRAAMTIVNDKF 480
           EYRRYNI+GIT GDDYAAM Q L RR+ K     K+PDV+ IDGG GQL  A  +    F
Sbjct: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV----F 479

Query: 481 AELD-----RQPLLVGVAKGESRKPGLETLIFGGSEAEFSLESDNPALHLIQHIRDESHR 535
           AELD       PLL+GVAKG  RK GLETL F      FSL  D+PALH+IQHIRDESH 
Sbjct: 480 AELDVSWDKNHPLLLGVAKGVDRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539

Query: 536 FAITGHRAKRQQTRNTSTLESIPGIGPKRRKALLQYLGGLQQVKNASVAELAKVPGISAE 595
            AI GHR KR + +NTS+LE+I G+GPKRR+ LL+Y+GGLQ ++NASV E+AKVPGIS  
Sbjct: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599

Query: 596 MAQTIHDALR 605
           +A+ I  +L+
Sbjct: 600 LAEKIFWSLK 609