Pairwise Alignments

Query, 332 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 337 a.a., LacI family DNA-binding transcriptional regulator from Pectobacterium carotovorum WPP14

 Score =  224 bits (570), Expect = 3e-63
 Identities = 126/330 (38%), Positives = 188/330 (56%), Gaps = 2/330 (0%)

Query: 1   MATIYDVSFLAGVSLATVSRVVNNTGKVSDKTRQKVHDAMAKLDYRPNTIAQSLASNRSN 60
           M T+ +V+  AGVS ATVSRV+N TG+V   TR  V  AM +L YRPN +A+SLA   SN
Sbjct: 1   MKTMLEVARRAGVSKATVSRVLNGTGQVKQATRDAVFQAMEELGYRPNFLARSLARRTSN 60

Query: 61  SIGVLVSQLDGPFYGPMMREVESALRAANKHVIIAAGHSDAAQEKDGVEFLLSRGCDALI 120
           SIG+++S  DGP++G ++R       +  KH+I+  GH     E+  V+ L  R CDA+I
Sbjct: 61  SIGLVISNFDGPYFGRLLRRATDIAESHGKHLIVTDGHDTPEDEQRAVQLLSDRQCDAII 120

Query: 121 VDAEILSNGYLVELCQGKT-PVVLINRHVDGIDERCVHLNNLQGGLLASRHVLEKGHKQI 179
           +    +S   L+ L    T P++++NR +    ERC+     Q       +++E+GH++I
Sbjct: 121 LYTRYMSETDLMTLLDTLTIPMIVMNRDLPQARERCIFFRQQQAAFDVVNYLIEQGHREI 180

Query: 180 AYISGPLFKLDARERLEGHRQALAEQGIAFDENLFYEGDFREEGGYEAMAQLLSRGRDFT 239
           A+I+ P+    A+ RL G++QAL    IA + +    G      GY+A  QLL  G  F+
Sbjct: 181 AFITAPMKTPTAQARLAGYQQALTTHQIALEPHRVAYGTSMVASGYQAARQLLDSGVSFS 240

Query: 240 AVVCANDQMASGAIAQCLERGLRVPEDISFVGFDNIPFPRYISPKLTTVCNPIQDMGRMA 299
           A+  +ND MA GA+    E G ++P+D+S  GFD+ P   Y+ P L+TV  PI++M   A
Sbjct: 241 ALFVSNDHMAIGAMKALYEAGKKLPQDVSVFGFDDEPCATYLHPSLSTVYMPIEEMAATA 300

Query: 300 AHWVLREVYDQTDVTFCHRFEPELVVRDSV 329
              VL ++    DV     F  EL +R+SV
Sbjct: 301 ITQVL-DLIAGKDVNPLQPFTGELKIRESV 329