Pairwise Alignments

Query, 332 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 340 a.a., LacI family transcriptional regulator from Agrobacterium fabrum C58

 Score =  191 bits (486), Expect = 2e-53
 Identities = 121/329 (36%), Positives = 186/329 (56%), Gaps = 4/329 (1%)

Query: 2   ATIYDVSFLAGVSLATVSRVVNNTGKVSDKTRQKVHDAMAKLDYRPNTIAQSLASNRSNS 61
           + I +V+ LAGVS+ATVSR +    KV  +TR+KV DA+ + ++ PN  A S     +N+
Sbjct: 7   SNIREVAALAGVSIATVSRALQQPDKVRPETRKKVFDAVRQANFVPNAQAASFRRQSNNT 66

Query: 62  IGVLVSQLDGPFYGPMMREVESALRAANKHVIIAAGHSDAAQEKDGVEFLLSRGCDALIV 121
           + +LV  +  PFY  + + VE A   A   V++    +D  +    ++ +  +  D LI+
Sbjct: 67  VILLVRDIGNPFYLEIYKGVEEAAGEAGFKVLMGDARNDEHRVATHIDMVRQKHADGLIL 126

Query: 122 DAEILSNGYLVELCQGKTPVVLINRHVDGIDERCVHLNNLQGGLLASRHVLEKGHKQIAY 181
                 +  L++      P+V+ +  V G+    V ++N    + A RH++  GH++I +
Sbjct: 127 MTGQFPSE-LLDQADALPPIVIASETVPGLALPTVKVDNRAASMNAMRHLIAAGHQRIVH 185

Query: 182 ISGPLFKLDARERLEGHRQALAEQGIAFDENLFYEGDFREEGGYEAMAQLLSRGRDFTAV 241
           ++GP+ +  A+ER +G+R ALAE GIA+ + L   GD+  E G +A+A LL  G  FTA+
Sbjct: 186 LAGPVPESLAQERFDGYRAALAEAGIAYADELVVTGDYSIEAGRQAIAGLLEGGIAFTAI 245

Query: 242 VCANDQMASGAIAQCLERGLRVPEDISFVGFDNIPFPRYISPKLTTVCNPIQDMGRMA-A 300
             ++DQMA GAI++   RGL VP D+S +GFD+I F     P LTTV  P Q+MGR A A
Sbjct: 246 FASSDQMAIGAISELRGRGLSVPADVSVIGFDDIIFANAFEPPLTTVRQPRQEMGRRAMA 305

Query: 301 HWVLREVYDQTDVTFCHRFEPELVVRDSV 329
             V R    +T  T     + ELVVR SV
Sbjct: 306 LMVDRLNGKRTAETIV--LDTELVVRGSV 332