Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score = 1252 bits (3239), Expect = 0.0
 Identities = 646/1146 (56%), Positives = 843/1146 (73%), Gaps = 13/1146 (1%)

Query: 8    RLPKTPAK-GRVSAVRLPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLK 66
            RLP  PA  G+     LPG  A +L +AE   +    TL++T+D+ +A  LE EL +   
Sbjct: 5    RLPLLPAAAGKQHWGNLPGA-ALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAP 63

Query: 67   PRGIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKA 126
               + +  FPD ETLPYD FSPHQD+ISQR+ +L  L      +++VP+TT + RL P  
Sbjct: 64   D--LPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTK 121

Query: 127  FLAANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLR 186
            FL  + L+L  G +  ++QMR  L  +GY  V+ VYEHGEFA+RG+++D+FP G+  P R
Sbjct: 122  FLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYR 181

Query: 187  IELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNA 246
            I+LFDDE+E++R FDPE QRS  +VDS+++LPAREFP    A+  F+ R+R  F+ V+  
Sbjct: 182  IDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFD-VDFR 240

Query: 247  AESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHLGEIHS 306
               ++Q +S  + PAGIE YLPLFFD+T+TLFDYLP++ Q+ +   + QAAE+   ++ +
Sbjct: 241  RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN 300

Query: 307  RYEDRQVDPLRPLLPPKTLYQTTEELFARFKLYPRI-----DLSGDEGDKTLEAAPLPDI 361
            RYE+R+VDP RPLLPP  L+   E+ FAR K +PR+     D+    G +   AA LPD+
Sbjct: 301  RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFPAATLPDL 360

Query: 362  RANHKLKQPLESLANW-AQGGQRIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLAS 420
                K  QPLE+L+N+      R+ F AES GRRE LLELL +  L+PK      +F+ S
Sbjct: 361  AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKS 420

Query: 421  DSPHGLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAE 480
                 + +APL  G  L +    LA++ E+ LFG+RV Q RRR+K+   + D +IKNL E
Sbjct: 421  KERLAITIAPLDEG--LLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTE 478

Query: 481  LKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGN 540
            L+ G PVVH++HGVG Y GL+TL+     AE+L +EYA G KLYVPV+ LHLI+R+   +
Sbjct: 479  LREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSD 538

Query: 541  DESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQG 600
            D  APL+RLG+E+W KAKRKA E++RDVAAELLD+YARR AR G      +A+YA F+ G
Sbjct: 539  DALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAG 598

Query: 601  FPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLV 660
            F FEET DQ+T I+AV  DM  PK MDRLVCGDVGFGKTEVAMRAAF+AV  GKQV +LV
Sbjct: 599  FAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILV 658

Query: 661  PTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNT 720
            PTTLLAQQH+ +F+DRFADWPV +EVMSRF++AKE  A ++ + EGK+DIVIGTHKLL+ 
Sbjct: 659  PTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSD 718

Query: 721  ELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 780
            ++  ++LGL+IIDEEHRFGVRQKE++KA+R+ VDILTLTATPIPRTLNMA+SGMRDLSII
Sbjct: 719  DVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSII 778

Query: 781  ATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEA 840
            ATPPA+RL+V+TFV E +K+TV+EA+LRE+LRGGQVYYLHN V+TIEK A D+ EL+PEA
Sbjct: 779  ATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEA 838

Query: 841  RVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQL 900
            R+   HGQMRERELE+VMSDFYH+RFNVL+ +TIIETGIDVPSANTI+I+RAD FGLAQL
Sbjct: 839  RIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQL 898

Query: 901  HQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 960
            HQLRGRVGRSHHQAYAYL+TP  + +T DA KRLEAI   +DLGAGF+LAT DLEIRGAG
Sbjct: 899  HQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAG 958

Query: 961  ELLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDY 1020
            ELLGD QSG I  +GF+LYMEMLE AVKA+++G++P+L Q LG   EI+LR+PAL+P++Y
Sbjct: 959  ELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEEY 1018

Query: 1021 VNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGAT 1080
            + DV+ RL LYKRIA    E+ + +++VE+IDRFGLLP+ T+NL+ +T+ K +A +LG  
Sbjct: 1019 LPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIK 1078

Query: 1081 KIEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLE 1140
            K++   +GG IEF  +  VDP  +I L+  QP  Y+ +G    +F +P E A+ER   LE
Sbjct: 1079 KVDAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLE 1138

Query: 1141 LLLEQL 1146
             L E+L
Sbjct: 1139 ALFERL 1144