Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1168 a.a., transcription-repair coupling factor from Rhizobium sp. OAE497

 Score =  699 bits (1805), Expect = 0.0
 Identities = 422/1166 (36%), Positives = 663/1166 (56%), Gaps = 55/1166 (4%)

Query: 23   LPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLKPRGIDICLFPDRETLP 82
            +P G+   L LAE+  +      I+ SD      LE  L ++     I +   P  + LP
Sbjct: 22   VPAGM-EPLLLAELARAGKPVAYIL-SDGQRMADLEQMLAFVAPE--IPVLTLPAWDCLP 77

Query: 83   YDSFSPHQDLISQRLETLSNL----ERGKGRLVIVPLTTLMVRLPPKAFLAANVLILKKG 138
            YD  SP  D  ++RL  LS L    ++    +V+V +  ++ ++ P+  + +     + G
Sbjct: 78   YDRVSPSADTSARRLAALSGLIAHQKKPHAAIVLVTVNAMLQKVAPQEVIESLAFSARPG 137

Query: 139  DRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLRIELFDDEVESIR 198
            ++ ++  +   L   G+  V  V E GE+A+RG ILD+F  G+ EP+R++ F D +ESIR
Sbjct: 138  NQVRMDDIAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGSEEPVRLDFFGDTLESIR 197

Query: 199  HFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNAAESVYQLVSRNL 258
             FDP +QR++G+V S+ + P  E       I  FR+ Y   F       +++Y  VS   
Sbjct: 198  SFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFGAATRD-DALYLAVSEGR 256

Query: 259  MPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHLGEIHSRYEDR------- 311
              AG+E++LPLF++   T+FDYL +  Q++T   + +AAE     +   Y+ R       
Sbjct: 257  RYAGMEHWLPLFYERLETVFDYL-KGFQLVTDHTVREAAEERSKLVLDYYDARLSSGQPS 315

Query: 312  -----QVDPLRPLLP------PKTLYQTTEELFARFKLYPRIDLSGD----------EGD 350
                 Q  P +P+ P       K+   T + L A  ++ P  +  G+          +G+
Sbjct: 316  KGQMAQGTPYKPVTPGQLYLDSKSFAGTLDALNA-IRMTPFNEHEGEARRVVNIDARQGE 374

Query: 351  KTLEAAPLPDIRAN--HKLKQPLESLANWAQGGQRIAFVAESEGRREALLELLGKAGLK- 407
            +   +       A   +     ++ +A+   GG ++   A +EG  + LL++L + GL+ 
Sbjct: 375  RWARSNAEGGGNAERVNVFDAVVKFIADKRAGGAKVLITAWTEGSLDRLLQVLNEHGLER 434

Query: 408  -PKLFGHLDEFLASDSPHGLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQERRRDKQ 466
               +    D    +       V  L  G +       L V+ E ++ G+R+    RR K+
Sbjct: 435  VKPIEALKDVVSLAKGEAASAVFSLESGFET----GDLIVIGEQDILGDRMV---RRSKR 487

Query: 467  RQLSQDVLIKNLAELKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVP 526
            R+ + D  I  +A L  G  VVH EHG+G + GL T++  G     L+L+YA   KL++P
Sbjct: 488  RKRAAD-FISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYADEAKLFLP 546

Query: 527  VSALHLISRFAVGNDESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGDP 586
            V  + L+SR+  G    A L++LG  +W   K K  +++ D+A  L+ + A R  R    
Sbjct: 547  VENIDLLSRYG-GEGTEAMLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPV 605

Query: 587  CTLDEAEYAQFAQGFPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAA 646
             T  E  Y +FA  FP++ET DQ+TAI+AV  D+   + MDRLVCGDVGFGKTEVA+RAA
Sbjct: 606  LTTPEGLYDEFAARFPYDETEDQDTAIEAVRGDLAAGRPMDRLVCGDVGFGKTEVALRAA 665

Query: 647  FLAVSSGKQVVVLVPTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEG 706
            F+A  +G QV V+VPTTLL++QHF+ F +RF   PVR++  SR   +K+       + +G
Sbjct: 666  FVAAMNGVQVAVVVPTTLLSRQHFKTFSERFRGLPVRVQQASRLVGSKDLALTKKEVADG 725

Query: 707  KVDIVIGTHKLLNTELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRT 766
            K DIV+GTH LL   +NF +LGLLIIDEE  FGV+ KER+K ++++V +LTL+ATPIPRT
Sbjct: 726  KTDIVVGTHALLGAGINFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRT 785

Query: 767  LNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETI 826
            L +AM+G+R+LS+I TPP  R+AV+TF+  +D   +RE ++RE  RGGQ +Y+  ++  +
Sbjct: 786  LQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCPRLADL 845

Query: 827  EKAAQDIRELLPEARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANT 886
            E     ++  +PE +V  AHGQM   ELE +M+ FY  R++VL+ TTI+E+G+DVP+ANT
Sbjct: 846  EDVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANT 905

Query: 887  ILIDRADHFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAG 946
            +++ RAD FGLAQL+QLRGRVGRS  +A+A    P  K++T  A +RL+ + +L+ LGAG
Sbjct: 906  LIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSLDTLGAG 965

Query: 947  FMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQC 1006
            F LA+ DL+IRGAG LLG+EQSGHI ++GF LY +MLE AV  +K   E +     G   
Sbjct: 966  FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIA---DTGWSP 1022

Query: 1007 EIDLRIPALLPDDYVNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLT 1066
            +I +  P ++PD+YV D+++R++LY+R+      K +D    E+IDRFG +P   ++LL 
Sbjct: 1023 QISVGTPVMIPDNYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDRFGPMPIEVQHLLK 1082

Query: 1067 MTVQKHRATRLGATKIEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFT 1126
            +   K         K++   +G  ++F  +   +P  ++G +  Q  + ++   + L  T
Sbjct: 1083 IVYVKSLCRIANVEKLDAGPKGIVVQFRNKEFPNPANLVGYIGKQGAMAKIRPDHSLFLT 1142

Query: 1127 MPCETAKERLELLELLLEQLEQHSVG 1152
                T ++RL+   +++ QL + + G
Sbjct: 1143 RDLPTPEKRLQGAAVIMTQLAELAKG 1168