Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1149 a.a., Transcription-repair-coupling factor from Pseudomonas sp. RS175

 Score = 1249 bits (3232), Expect = 0.0
 Identities = 646/1146 (56%), Positives = 839/1146 (73%), Gaps = 13/1146 (1%)

Query: 8    RLPKTPA-KGRVSAVRLPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLK 66
            RLP  PA  G+     LPG  A +L +AE   +    TL++T+D+ +A  LE EL +   
Sbjct: 5    RLPHLPACAGKQHWGNLPGA-ALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAP 63

Query: 67   PRGIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKA 126
               + +  FPD ETLPYD FSPHQD+ISQR+ +L  L      +++VP+TT + RL P  
Sbjct: 64   D--LPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPTQ 121

Query: 127  FLAANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLR 186
            FL  + L+L  G +  ++QMR  L  +GY  V+ VYEHGEFA+RG+++D+FP G+  P R
Sbjct: 122  FLLGSSLVLDIGQKLDVEQMRSRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYR 181

Query: 187  IELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNA 246
            I+LFDDE+E++R FDPE QRS  +V S+R+LPA+EFP   +A+  F+ R+R  F+ V+  
Sbjct: 182  IDLFDDEIETLRTFDPENQRSIDKVQSVRLLPAKEFPLQKEAVTRFKARFRERFD-VDFR 240

Query: 247  AESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHLGEIHS 306
               ++Q +S  + PAGIE YLPLFF+DT+TLFDYLP++ Q+ +   + QAAE+   ++ +
Sbjct: 241  RCPIFQDLSSGITPAGIEYYLPLFFEDTSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN 300

Query: 307  RYEDRQVDPLRPLLPPKTLYQTTEELFARFKLYPRI-----DLSGDEGDKTLEAAPLPDI 361
            RYE+R+VDP RPLLPP  L+   E+ FAR K +PR+     D+    G +   A PLPD+
Sbjct: 301  RYEERRVDPARPLLPPAELFLPVEDCFARLKSWPRVVASQQDVEPGVGRERFPAKPLPDL 360

Query: 362  RANHKLKQPLESLANWA-QGGQRIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLAS 420
                K  QPL +LA +  +   R+ F AES GRRE LLELL +  L+PK      +F+A 
Sbjct: 361  AIEAKATQPLWALAGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG 420

Query: 421  DSPHGLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAE 480
                 + +APL  G  L +    LA+V E+ LFG+RV Q RRR+K+   S + +IKNL E
Sbjct: 421  TDRLAITIAPLDEG--LVLDDPALALVAESPLFGQRVMQRRRREKRADASNEAVIKNLTE 478

Query: 481  LKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGN 540
            L+ G PVVH++HGVG Y GL TL+     AE+L LEYA G KLYVPV+ LHLI+R+   +
Sbjct: 479  LREGAPVVHIDHGVGRYLGLATLEVDNQTAEFLTLEYAEGAKLYVPVANLHLIARYTGSD 538

Query: 541  DESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQG 600
            D  APL+RLG+E+W KAKRKA E++RDVAAELLD+YARR AR G   T  + +Y  F+ G
Sbjct: 539  DALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFTDPKVDYETFSAG 598

Query: 601  FPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLV 660
            FPFEETVDQ+T I+AV  DM  PK MDRLVCGDVGFGKTEVAMRAAF+AV SGKQV +LV
Sbjct: 599  FPFEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAILV 658

Query: 661  PTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNT 720
            PTTLLAQQH+ +F+DRFADWPV +EVMSRF++AKE  A +  + EGK+DIVIGTHKLL  
Sbjct: 659  PTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVKDLAEGKIDIVIGTHKLLQD 718

Query: 721  ELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 780
            ++  ++LGL+IIDEEHRFGVRQKE++KA+R+ VDILTLTATPIPRTLNMA+SGMRDLSII
Sbjct: 719  DVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSII 778

Query: 781  ATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEA 840
            ATPPA+RL+V+TFV E +K+TV+EA+LRE+LRGGQVYYLHN V+TIEK A D+ EL+PEA
Sbjct: 779  ATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEA 838

Query: 841  RVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQL 900
            R+   HGQMRERELE+VMSDFYH+RFNVL+ +TIIETGIDVPSANTI+I+RAD FGLAQL
Sbjct: 839  RIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQL 898

Query: 901  HQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 960
            HQLRGRVGRSHHQAYAYL+TP  + +T DA KRLEAI   +DLGAGF+LAT DLEIRGAG
Sbjct: 899  HQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAG 958

Query: 961  ELLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDY 1020
            ELLGD QSG I  +GF+LYMEMLE AVK++++G++P+L Q LG   EI+LR+PAL+P+DY
Sbjct: 959  ELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDY 1018

Query: 1021 VNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGAT 1080
            + DV+ RL LYKRIA    E+ + +++VE+IDRFGLLP+ T+NL+  T+ K +A +LG  
Sbjct: 1019 LPDVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIK 1078

Query: 1081 KIEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLE 1140
            K++    GG IEF  +  VDP  +I L+  QP+ Y+ +G    +F +P E  +ER   +E
Sbjct: 1079 KVDGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVE 1138

Query: 1141 LLLEQL 1146
             L E+L
Sbjct: 1139 ALFERL 1144