Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1150 a.a., transcription-repair coupling factor from Pectobacterium carotovorum WPP14

 Score = 1282 bits (3318), Expect = 0.0
 Identities = 665/1133 (58%), Positives = 832/1133 (73%), Gaps = 16/1133 (1%)

Query: 26   GVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLKPRGIDICLFPDRETLPYDS 85
            G A A+  AE+   +AG  +++  D   AL L  E+          +   PD ETLPYDS
Sbjct: 25   GAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEIQQFTDQH---VTTLPDWETLPYDS 81

Query: 86   FSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKAFLAANVLILKKGDRYQLQQ 145
            FSPHQ++IS RL TL  L      ++I+P+ TLM R+ P +FL  + L+LKKG R    +
Sbjct: 82   FSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCPHSFLHGHALVLKKGQRLSRDK 141

Query: 146  MRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLRIELFDDEVESIRHFDPETQ 205
            +R  L   GY  V+QV EHGE+A RG++LD+FP G+ EP RI+ FDDE++S+R FD +TQ
Sbjct: 142  LRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEPYRIDFFDDEIDSLRLFDVDTQ 201

Query: 206  RSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNAAESVYQLVSRNLMPAGIEN 265
            R+  EV  I +LPA EFPTD  AIE FR ++R  FE V   AE +YQ VS+ + PAGIE 
Sbjct: 202  RTLNEVPHINLLPAHEFPTDKTAIELFRSQWREQFE-VRRDAEHIYQQVSKGVWPAGIEY 260

Query: 266  YLPLFFDDTA-TLFDYLPEELQIITTGALHQAAEHHLGEIHSRYEDRQVDPLRPLLPPKT 324
            + PLFF +   +LF Y P    ++ TG L Q+AE    +I  R+E R+VDP+RPLLP  +
Sbjct: 261  WQPLFFSEPLPSLFSYFPNNTLLVNTGNLEQSAERFWQDIQQRFESRRVDPMRPLLPSDS 320

Query: 325  LYQTTEELFARFKLYPRIDLSGDE-----GDKTLEAAPLPDIRANHKLKQPLESLANWA- 378
            L+   + LF   K +PR+ L  D       +  L   PLP++   H+ K PL++L  +  
Sbjct: 321  LWLRVDGLFTELKAWPRVQLKTDTLPEKAANVNLAYLPLPELAIQHQQKSPLDALRRFIE 380

Query: 379  QGGQRIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLASDSPHGLVVAPLAMGCQLK 438
            Q   ++ F  ESEGRRE L ELL +  L P L   L++  A D    L++     G    
Sbjct: 381  QFDGQVIFSVESEGRRETLQELLARIKLNPTLISTLEQ--AQDRGTYLIIGASEHGFIDT 438

Query: 439  MGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAELKVGQPVVHLEHGVGLYQ 498
            +   Q A++CE++L GERVS+ RR+D +R ++ D LI+NLAEL+ GQPVVHLEHGVG Y 
Sbjct: 439  L--RQRALICESDLLGERVSR-RRQDSRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYA 495

Query: 499  GLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGNDESAPLNRLGNESWSKAK 558
            GL TL+ GG+ AEYL L YAG DKLYVPVS+LHLISR+A G DE+APL++LG ++WS+A+
Sbjct: 496  GLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADENAPLHKLGGDAWSRAR 555

Query: 559  RKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQGFPFEETVDQETAIKAVID 618
            +KA E++RDVAAELLD+YA+R A+ G     D+ +Y  F + FPFE T DQ  AI AV+ 
Sbjct: 556  QKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPFETTPDQAQAINAVLS 615

Query: 619  DMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFENFKDRFA 678
            DMCQP AMDRLVCGDVGFGKTEVAMRAAFLAV + KQV VLVPTTLLAQQHF+NF+DRFA
Sbjct: 616  DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDNFRDRFA 675

Query: 679  DWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLGLLIIDEEHRF 738
            +WPV+IE++SRFR+A+EQ  VL    EGKVDI+IGTHKLL +++ +  LGLLI+DEEHRF
Sbjct: 676  NWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGTHKLLQSDVRWRDLGLLIVDEEHRF 735

Query: 739  GVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYD 798
            GVR KERIKAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPPA+RLAVKTFVREYD
Sbjct: 736  GVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 795

Query: 799  KATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEARVVTAHGQMRERELERVM 858
               VREAILREILRGGQVYYL+N VE IEKA Q + EL+PEAR+   HGQMRERELERVM
Sbjct: 796  NLVVREAILREILRGGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQMRERELERVM 855

Query: 859  SDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQLHQLRGRVGRSHHQAYAYL 918
            +DF+HQRFNVLVCTTIIETGID+PSANTI+I+RADHFGLAQLHQLRGRVGRSHHQAYAYL
Sbjct: 856  NDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYL 915

Query: 919  MTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSL 978
            +TP+PK M+ DA+KRLEAI +LEDLGAGF LAT DLEIRGAGELLGD+QSG ++ +GFSL
Sbjct: 916  LTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGDDQSGQMTSVGFSL 975

Query: 979  YMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDYVNDVNMRLSLYKRIAGCD 1038
            YME+LE AV ALK G+EPSL  ++ +Q +++LR+PALLPDD++ DVN RLSLYKRIA   
Sbjct: 976  YMELLESAVDALKAGREPSLEDLINSQTDVELRLPALLPDDFIPDVNTRLSLYKRIASAK 1035

Query: 1039 TEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGATKIEMHGRGGSIEFGEEHR 1098
            T   +DE+KVELIDRFGLLPDA+R LL +   + +A  LG  +IE + +GG IEF E++R
Sbjct: 1036 TPAELDELKVELIDRFGLLPDASRYLLQVAALRQQAQALGIRRIEGNEKGGFIEFSEQNR 1095

Query: 1099 VDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLELLLEQLEQHSV 1151
            VDP  +IGLL   P  YR+DGP +L+F        +R+E +  LL  + QH++
Sbjct: 1096 VDPSHLIGLLQRDPGTYRLDGPTRLKFMKDLSDRPQRIEFIGSLLGNMAQHTL 1148