Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1135 a.a., Transcription-repair-coupling factor from Methylophilus sp. DMC18

 Score = 1064 bits (2751), Expect = 0.0
 Identities = 570/1118 (50%), Positives = 758/1118 (67%), Gaps = 15/1118 (1%)

Query: 33   LAEMTCSYAGTT---LIVTSDTPTALVLEAELGYLLKPRGIDICLFPDRETLPYDSFSPH 89
            LAE+ C    T    +++T+    A  L  E+ +  K   I I L PD ETLPYD FSPH
Sbjct: 26   LAELACGLKATNTPLVVLTASAFEAQRLMDEIPFFGKE--IAIHLLPDWETLPYDVFSPH 83

Query: 90   QDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKAFLAANVLILKKGDRYQLQQMRQH 149
             DLIS+RL TL  L + +  +VIVP+ T ++RLPP A+LAA+  +LKKG R  ++ +R  
Sbjct: 84   PDLISERLATLYQLSQNQSNVVIVPMATALLRLPPVAYLAAHSFMLKKGQRLDVEALRNQ 143

Query: 150  LVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLRIELFDDEVESIRHFDPETQRSSG 209
                GYH V QV   GEF++RG ++D+FP G++ P RI+LFDDE+E+IR FD +TQRS  
Sbjct: 144  CAQAGYHHVSQVMAPGEFSVRGGLVDLFPMGSAFPYRIDLFDDEIETIRTFDIDTQRSVY 203

Query: 210  EVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNAAESVYQLVSRNLMPAGIENYLPL 269
             V  IRMLPAREFP D  AI  FR ++R  FE     A+ +Y+ VS+     G+E YLPL
Sbjct: 204  PVPEIRMLPAREFPMDEAAITRFRSQFREYFEGDPQRAK-IYKDVSKGTPSGGVEWYLPL 262

Query: 270  FFDDTATLFDYLPEELQIITTGALHQAAEHHLGEIHSRYEDRQVDPLRPLLPPKTLYQTT 329
            FF+ TATLFDYLP +  +   G L +AA+    +  +RY     D  +P+L P+TL Q  
Sbjct: 263  FFEQTATLFDYLPAQTVLCLHGDLDKAAQTFWADASTRYRLMAHDAEKPILRPETLLQKA 322

Query: 330  EELFARFKLYPRIDLSGDEGDKTLEAAPLPDIRANHKLKQPLESLANWAQGGQ-RIAFVA 388
            +E F R   +  +        +  +   LP +  + + +QPL  L  + Q    R+   A
Sbjct: 323  DEFFKRTHDFALVT------QQIAQQTVLPPVDVDRRAEQPLHKLQAFIQQFDGRVMIAA 376

Query: 389  ESEGRREALLELLGKAGLKPKLFGHLDEFLASDSPHGLVVAPLAMGCQLK-MGKSQLAVV 447
            ES GRRE + +L    GL   L      F  S+ P  L VAPL  G   K + +  LAVV
Sbjct: 377  ESLGRRETIAQLFSDHGLSFSLAEDWAGFAQSNFPVMLGVAPLHQGMMDKDVREGALAVV 436

Query: 448  CETELFGERVSQERRRDKQRQLSQDVLIKNLAELKVGQPVVHLEHGVGLYQGLETLDTGG 507
             E EL+   V Q+RRR++++  + + ++K+L+EL++  PVVH +HGVG Y+GL  +D G 
Sbjct: 437  TEAELYASTVRQQRRRNQEKARNAEGMLKDLSELRLDDPVVHEQHGVGRYKGLVNIDFGE 496

Query: 508  LVAEYLKLEYAGGDKLYVPVSALHLISRFAVGNDESAPLNRLGNESWSKAKRKAIEKIRD 567
               E L +EY G DKLYVPVS L LISR++ G  ESAPL+RLG+  W KAK+KA+++IRD
Sbjct: 497  GETELLLIEYFGEDKLYVPVSQLFLISRYSGGPPESAPLHRLGSGQWEKAKKKALKQIRD 556

Query: 568  VAAELLDVYARREARPGDPCTLDEAEYAQFAQGFPFEETVDQETAIKAVIDDMCQPKAMD 627
             AAELL++YA+R AR G   TL   +Y  F +GFPFEET DQ  AI+AVI DM   + MD
Sbjct: 557  TAAELLNLYAQRAARKGHAFTLGLHDYEAFCEGFPFEETPDQLDAIEAVIKDMQSGRPMD 616

Query: 628  RLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFENFKDRFADWPVRIEVM 687
            RLVCGDVGFGKTEVA+RAAF+AV  G+QV VLVPTTLLA+QH++NF DRFA+WP+++  +
Sbjct: 617  RLVCGDVGFGKTEVALRAAFVAVMGGRQVAVLVPTTLLAEQHYQNFVDRFAEWPIKVAEI 676

Query: 688  SRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLGLLIIDEEHRFGVRQKERIK 747
            SRFRTAKEQ   +  + +G +DI+IGTH+L+  ++ F++LGL I+DEEHRFGVRQKE++K
Sbjct: 677  SRFRTAKEQAEAIKGLADGSIDIIIGTHRLIQKDVKFKNLGLAILDEEHRFGVRQKEQMK 736

Query: 748  AMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATVREAIL 807
            A+RA VD+LTLTATPIPRTL+MAM G+R+ S+I+TPP KRLA+KTF   Y    +REA++
Sbjct: 737  ALRAEVDVLTLTATPIPRTLSMAMEGLREFSVISTPPQKRLAIKTFHTPYSDGIIREAVM 796

Query: 808  REILRGGQVYYLHNQVETIEKAAQDIRELLPEARVVTAHGQMRERELERVMSDFYHQRFN 867
            RE  RGGQVY+LHN+V+TI    + + +++PEAR+V  HGQ+RERELE VM DFY QR N
Sbjct: 797  REFKRGGQVYFLHNEVDTIYVMKEKLEKIVPEARIVIGHGQLRERELEHVMRDFYQQRAN 856

Query: 868  VLVCTTIIETGIDVPSANTILIDRADHFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKLMT 927
            +L+CTTI+ETGIDVP+ANT++I++AD FGLAQLHQLRGRVGRSHHQAY YL+T   + +T
Sbjct: 857  LLLCTTIVETGIDVPTANTMIINKADMFGLAQLHQLRGRVGRSHHQAYTYLLTDPHRNIT 916

Query: 928  VDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEGAV 987
              A+KRL+AI  LEDLGAGF LA  DLEIRGAGELLGD QSG + +IGF+LY +ML  AV
Sbjct: 917  PQAQKRLDAIQLLEDLGAGFHLAMHDLEIRGAGELLGDSQSGEMQEIGFNLYSDMLNHAV 976

Query: 988  KALKQGKEPSLRQMLGAQCEIDLRIPALLPDDYVNDVNMRLSLYKRIAGCDTEKAVDEMK 1047
            K LK GKEP L   LG   EI+L  PALLP++Y  DV+ RL +YKR+A C+ + A+D M+
Sbjct: 977  KQLKAGKEPDLDAPLGVTTEINLHTPALLPNNYCPDVHERLVIYKRLANCEDDDALDAMQ 1036

Query: 1048 VELIDRFGLLPDATRNLLTMTVQKHRATRLGATKIEMHGRGGSIEFGEEHRVDPGFIIGL 1107
             ELIDRFGLLP+    L+     +  A  LG  KI+       ++F  +  +DP  +I L
Sbjct: 1037 EELIDRFGLLPEPGEALIACHRLRIAAKALGIIKIDASDAAIQLQFNVKADLDPLKLINL 1096

Query: 1108 LSSQPQVYRMDGPNKLRFTMPCETAKERLELLELLLEQ 1145
            L    +  RM+GP+KLR T+       R+EL++ LL++
Sbjct: 1097 LQRDKRC-RMNGPDKLRVTVQLGNLNHRVELVKTLLKE 1133