Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1140 a.a., transcription-repair coupling factor from Kangiella aquimarina DSM 16071

 Score = 1212 bits (3137), Expect = 0.0
 Identities = 627/1096 (57%), Positives = 799/1096 (72%), Gaps = 10/1096 (0%)

Query: 26   GVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLL-KPRGIDICLFPDRETLPYD 84
            G +RAL  A++        ++++ DTP    L+ E+ Y L K   I + +FPD ETLPYD
Sbjct: 23   GSSRALAFAKLAEQREQPIVVISDDTPALWQLQKEIQYFLGKDSDIPVMVFPDWETLPYD 82

Query: 85   SFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKAFLAANVLILKKGDRYQLQ 144
            +FSPHQD++S+RL TL NL R K  +V++ + TL+++LPP+ ++  N LI+  G +  + 
Sbjct: 83   NFSPHQDIVSERLLTLYNLPRLKHGIVLIAVNTLLLKLPPQEYIEQNSLIVHTGQKLDMH 142

Query: 145  QMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLRIELFDDEVESIRHFDPET 204
            ++R+   ++GYH V QV+ HGE+A+RGSILD+FP G+ +PLR++ FDDE++SIR+FDPE+
Sbjct: 143  EVRKLFEESGYHSVNQVFSHGEYAVRGSILDVFPMGSEKPLRLDFFDDEIDSIRYFDPES 202

Query: 205  QRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNAAESVYQLVSRNLMPAGIE 264
            Q S  ++    +LPA+EFP D + I  FRQ +R  FE VN     +YQ VS    PAGIE
Sbjct: 203  QLSDQKIQKFELLPAKEFPLDDEGIATFRQNFRAEFE-VNLQRVWLYQEVSNGNSPAGIE 261

Query: 265  NYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHLGEIHSRYEDRQVDPLRPLLPPKT 324
             YLPLFF+   T FDYLP++  I T G     AEH+  EI  RYE R+ D  RP+L PK 
Sbjct: 262  YYLPLFFEQLDTFFDYLPQQSLICTLGDHQLHAEHYWDEITERYEQRRHDIERPILEPKK 321

Query: 325  LYQTTEELFARFKLYPRIDLSGDEGDKTLEAAPLPDIRANHKLKQPLESLANWAQGGQRI 384
            LY   +EL ++ K + RI +  +  D   +A+P+P +  +HK K P+    ++ +     
Sbjct: 322  LYLAADELNSQLKQHIRIHIKQERPDADYQASPMPMMAIDHKAKDPVNQFRSFLKQWTGQ 381

Query: 385  AFVA-ESEGRREALLELLGKAGLKPKLFGHLDEFLASDSPHGLV-VAPLAMGCQLKMGKS 442
             F+A ES GRREAL +LL +  ++  +  H  E  ASDS + ++ VAPL+ G  L    S
Sbjct: 382  CFIATESPGRREALKDLLSRNEIQASVVEHWSE--ASDSKNLVIGVAPLSKGFAL----S 435

Query: 443  QLAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAELKVGQPVVHLEHGVGLYQGLET 502
             LAVV ETELFGE V + RRRD +     + +I+NLAELK G PVVH+E G+G Y+GL  
Sbjct: 436  DLAVVTETELFGENVIKTRRRDTKAADQAEDMIRNLAELKEGDPVVHIEQGIGRYRGLVK 495

Query: 503  LDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGNDESAPLNRLGNESWSKAKRKAI 562
            L++G + AEYL +EYAGGDKLY+PV +LHLI R++  N E AP ++LG E W KA++KA 
Sbjct: 496  LESGDIEAEYLMIEYAGGDKLYMPVQSLHLIGRYSGTNPELAPWHKLGTEQWDKARQKAA 555

Query: 563  EKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQGFPFEETVDQETAIKAVIDDMCQ 622
            EK RDVAAELLD+YARR A+ G    LDEAEY +F   F FEETVDQ TAI AVI DM  
Sbjct: 556  EKARDVAAELLDIYARRAAKEGIQYQLDEAEYRRFCAEFAFEETVDQTTAINAVIRDMTS 615

Query: 623  PKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFENFKDRFADWPV 682
               MDRLVCGDVGFGKTEVA+RAAF+A  SGKQV VLVPTTLLAQQHFE F DRFADWP+
Sbjct: 616  HLPMDRLVCGDVGFGKTEVALRAAFIAAQSGKQVAVLVPTTLLAQQHFETFSDRFADWPM 675

Query: 683  RIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLGLLIIDEEHRFGVRQ 742
            ++  +SRF T KE QA L  + +G VDIV+GTHKL+  ++ F+ LGLLIIDEEHRFGVRQ
Sbjct: 676  KVASLSRFATNKEVQATLKGLEDGTVDIVVGTHKLIQQDVKFKRLGLLIIDEEHRFGVRQ 735

Query: 743  KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATV 802
            KE++K  R  VDILTLTATPIPRTLNM+MSGMRDLSIIATPPA+RL+VKTFVREY K  +
Sbjct: 736  KEQLKKFRTEVDILTLTATPIPRTLNMSMSGMRDLSIIATPPARRLSVKTFVREYHKPLI 795

Query: 803  REAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEARVVTAHGQMRERELERVMSDFY 862
            REA+LREILRGGQVY+LHN V+TI++  ++++ELLPEAR+  AHGQMRERELE+VM DFY
Sbjct: 796  REAVLREILRGGQVYFLHNAVDTIQRTLEELQELLPEARIQLAHGQMRERELEQVMRDFY 855

Query: 863  HQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQLHQLRGRVGRSHHQAYAYLMTPH 922
            HQRFNVLVCTTI+ETGID P+ANT++IDRAD FGLAQLHQLRGRVGRSHHQAYAYL+TP 
Sbjct: 856  HQRFNVLVCTTIVETGIDNPNANTMIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPA 915

Query: 923  PKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEM 982
             + +T DA KRL+AI +LEDLGAGF LAT DLEIRGAGELLGDEQSG +  +GF+LYM+M
Sbjct: 916  GRKITKDAEKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQMQAVGFNLYMDM 975

Query: 983  LEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDYVNDVNMRLSLYKRIAGCDTEKA 1042
            LE AVKALK GKEPSL+Q L  + EIDL +PAL+PDDY+ DV  RLSLYKRIA   T++ 
Sbjct: 976  LEDAVKALKDGKEPSLQQSLKQKTEIDLSVPALIPDDYIGDVATRLSLYKRIANAKTKEQ 1035

Query: 1043 VDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGATKIEMHGRGGSIEFGEEHRVDPG 1102
            +D ++VE IDRFGLLP+A +NL T+T    R   LG +KI++   G  I F ++ ++DPG
Sbjct: 1036 LDALQVEFIDRFGLLPEALKNLFTLTELALRVQPLGISKIDLVKTGIRIRFTQDTQIDPG 1095

Query: 1103 FIIGLLSSQPQVYRMD 1118
             +I L+   P  YR +
Sbjct: 1096 KLIRLIQLNPSRYRFE 1111