Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC62

 Score = 1268 bits (3281), Expect = 0.0
 Identities = 655/1133 (57%), Positives = 834/1133 (73%), Gaps = 16/1133 (1%)

Query: 26   GVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLKPRGIDICLFPDRETLPYDS 85
            G A A  +AE+   +AG  +++  D   AL L  E+        +++    D ETLPYDS
Sbjct: 40   GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA---DWETLPYDS 96

Query: 86   FSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKAFLAANVLILKKGDRYQLQQ 145
            FSPHQD+IS RL TL  L   +  ++IVP+ TLM R+ P +FL  + L++KKG R     
Sbjct: 97   FSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 156

Query: 146  MRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLRIELFDDEVESIRHFDPETQ 205
            +R  L   GY  V+QV EHGE+A RG++LD+FP G+  P R++ FDDE++S+R FD ++Q
Sbjct: 157  LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 216

Query: 206  RSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNAAESVYQLVSRNLMPAGIEN 265
            R+  EV++I +LPA EFPTD  AIE FR ++R TFE V    E +YQ VS+  +PAGIE 
Sbjct: 217  RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE-VKRDPEHIYQQVSKGTLPAGIEY 275

Query: 266  YLPLFFDDTAT-LFDYLPEELQIITTGALHQAAEHHLGEIHSRYEDRQVDPLRPLLPPKT 324
            + PLFF +    LF Y P    ++ TG L  +AE    +  +R+E+R VDP+RPLLPP++
Sbjct: 276  WQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQS 335

Query: 325  LYQTTEELFARFKLYPRIDLSGDE-----GDKTLEAAPLPDIRANHKLKQPLESLANWAQ 379
            L+   +ELF+  K +PR+ L  +       +  L    LPD+    + K PL++L  + +
Sbjct: 336  LWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLE 395

Query: 380  GGQR-IAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLASDSPHGLVVAPLAMGCQLK 438
                 + F  ESEGRREAL ELL +  + P+    LDE  ASD    L++     G   K
Sbjct: 396  TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGRYLMIGAAEHGFVDK 453

Query: 439  MGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAELKVGQPVVHLEHGVGLYQ 498
            +    LA++CE++L GERV++ RR+D +R ++ D LI+NLAEL +GQPVVHLEHGVG Y 
Sbjct: 454  V--RNLALICESDLLGERVAR-RRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYA 510

Query: 499  GLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGNDESAPLNRLGNESWSKAK 558
            G+ TL+ GG+  EYL L YA   KLYVPVS+LHLISR+A G +E+APL++LG ++WS+A+
Sbjct: 511  GMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR 570

Query: 559  RKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQGFPFEETVDQETAIKAVID 618
            +KA EK+RDVAAELLD+YA+R A+ G     D  +Y  F   FPFE T DQ  AI AV+ 
Sbjct: 571  QKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLS 630

Query: 619  DMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFENFKDRFA 678
            DMCQP AMDRLVCGDVGFGKTEVAMRAAFLAV + KQV VLVPTTLLAQQH++NF+DRFA
Sbjct: 631  DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 690

Query: 679  DWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLGLLIIDEEHRF 738
            +WPVRIE++SRFR+AKEQ  +L+ + EGK+DI+IGTHKLL +++ F+ LGLLI+DEEHRF
Sbjct: 691  NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF 750

Query: 739  GVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYD 798
            GVR KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA+RLAVKTFVREYD
Sbjct: 751  GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 810

Query: 799  KATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEARVVTAHGQMRERELERVM 858
               VREAILREILRGGQVYYL+N VE I+KAA+ + EL+PEAR+   HGQMRERELERVM
Sbjct: 811  SLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 870

Query: 859  SDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQLHQLRGRVGRSHHQAYAYL 918
            +DF+HQRFNVLVCTTIIETGID+P+ANTI+I+RADHFGLAQLHQLRGRVGRSHHQAYA+L
Sbjct: 871  NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 930

Query: 919  MTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSL 978
            +TPHPK MT DA+KRLEAI +LEDLGAGF LAT DLEIRGAGELLG+EQSG +  IGFSL
Sbjct: 931  LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL 990

Query: 979  YMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDYVNDVNMRLSLYKRIAGCD 1038
            YME+LE AV ALK G+EPSL  +   Q E++LR+P+LLPDD++ DVN RLS YKRIA   
Sbjct: 991  YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1050

Query: 1039 TEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGATKIEMHGRGGSIEFGEEHR 1098
            TE  ++E+KVELIDRFGLLPD  R LL +   + +A +LG  K+E + +GG IEF E++ 
Sbjct: 1051 TENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1110

Query: 1099 VDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLELLLEQLEQHSV 1151
            V+P ++IGLL  QPQ YR+DGP +L+F       K R+E +   + +LE++++
Sbjct: 1111 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1163