Pairwise Alignments

Query, 381 a.a., exonuclease SbcD, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 413 a.a., exonuclease SbcD from Pseudomonas simiae WCS417

 Score =  144 bits (364), Expect = 3e-39
 Identities = 113/296 (38%), Positives = 149/296 (50%), Gaps = 26/296 (8%)

Query: 1   MRFIHTSDWHLGRTLHNQSLLDEQAQMLETLLTLIETHEVDALVIAGDIFDRSVPPAAAV 60
           MR  HTSDWHLG+ LH Q    E A  LE LL  ++TH  D L+IAGDIFD   PP  A 
Sbjct: 1   MRLFHTSDWHLGQNLHGQERDFEHACFLEWLLGQLKTHLPDVLLIAGDIFDTVNPPLKAQ 60

Query: 61  SLLDDFLDKVVQQ-LKVSVIAIGGNHDGQERLAFGARQM-------AGAGLYI-QGPVRA 111
             L DF+    +Q  K++++ I GNHD   R+   A  M        G  L++  G + A
Sbjct: 61  ERLYDFIISAHEQNPKLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDA 120

Query: 112 SIEPVHIDGKQG--AAFFYPIPYAEPALVRHL-LNDEDIHSHQDAMAALLAKVTAHNSDG 168
               + +   +G  AA+   +P+  PA V    L D+ +         L+A   A    G
Sbjct: 121 ERLLIPLPDAKGKIAAWCLALPFLRPAEVTGAHLGDDYLRGIGQVHEWLIAAANAKRKKG 180

Query: 169 LPKIVISHCFLDGGNES-DSERPLSIGGADKISPALF-APFDYAALGHLHGPQ-YKGAEH 225
              I ISH  + GG+ S DSER L IG A+ +  +LF     Y ALGHLH PQ   G E 
Sbjct: 181 QALIAISHAHMAGGSVSEDSERSLIIGNAEALPASLFDRSVAYVALGHLHKPQKVNGEER 240

Query: 226 VRYSGSPLKYSFSE---QHQNKSVT-----LVNILPGQAP---DIRLLPIKPQRDV 270
           +RYSGSP+  SFSE   +HQ   VT     LV++ P   P   D++ L   P  D+
Sbjct: 241 IRYSGSPIPLSFSEIGYKHQILDVTFQGQCLVSVEPLLIPRSVDLQRLEAAPLADI 296