Pairwise Alignments

Query, 381 a.a., exonuclease SbcD, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 407 a.a., exonuclease subunit SbcD from Erwinia amylovora T8

 Score =  147 bits (370), Expect = 7e-40
 Identities = 112/388 (28%), Positives = 182/388 (46%), Gaps = 37/388 (9%)

Query: 1   MRFIHTSDWHLGRTLHNQSLLDEQAQMLETLLTLIETHEVDALVIAGDIFDRSVPPAAAV 60
           MR IHT+DWHLG+  + +S   E    L+ LL   E  + DA+++AGDIFD   PP+ A 
Sbjct: 1   MRIIHTADWHLGQFFYTKSRAAEHQAFLDWLLEQAEAQQADAIIVAGDIFDTGTPPSYAR 60

Query: 61  SLLDDFLDKVVQQLKVSVIAIGGNHDGQERLAFGARQMAGAGLYIQG----PVRASIEPV 116
            L + F+ K +Q  +  ++ +GGNHD    L      +A     +       +R  +  +
Sbjct: 61  ELYNRFVVK-LQPTRCQLVVLGGNHDSVATLNESRELLACLNTRVIAAACDDIRQQVLVL 119

Query: 117 HIDGKQGAAFFYPIPYAEPALVRHLLNDEDIHSHQDAMAALLAKVTAHNSD--------- 167
           +    Q  A    IP+  P   R +L  +   S ++   +LL  ++ H            
Sbjct: 120 NRRDGQPGALLCAIPFLRP---RDILRSQSGQSGREKQQSLLEAISEHYQRCWQQALAQR 176

Query: 168 -----GLPKIVISHCFLDGGNESDSERPLSIGGADKISPALFAPFDYAALGHLHGPQ-YK 221
                 LP I   H    G  +SD+ R + IG  D      F P DY ALGH+H  Q   
Sbjct: 177 DALGLALPIIATGHLTTMGVTKSDAVRDIYIGTLDAFPADCFPPADYIALGHIHRAQRIA 236

Query: 222 GAEHVRYSGSPLKYSFSEQHQNKSVTLVNILPGQAPDIRLLPIKPQRDVRIIEGYLD--- 278
            +EH+RYSGSP+  SF E  + KSV  V+   G+  ++  LPI   + +++I+G L+   
Sbjct: 237 DSEHIRYSGSPIPLSFDELGKAKSVMRVDFSAGKLSEVTALPIPLFQPMQMIKGSLEQIE 296

Query: 279 ---ALLTRGASDPGRDDYLMVRLLDTHAILEPMAKLR----AIYPNVLHLERTGLMQERA 331
              ALL   A   G+  +L + ++    + +   +++    A+   V+ L R+   +E+ 
Sbjct: 297 QQLALLVPDAQ--GKTTWLDIEIVTDAYLSDHQRRIQELTAALPVEVVLLRRSREQREQV 354

Query: 332 LEGPGRERMQKSELTMFEDFFTQVQGEP 359
           +     E +  SEL++ E F  ++  EP
Sbjct: 355 IARQNNETL--SELSVEEVFARRLGSEP 380