Pairwise Alignments

Query, 381 a.a., exonuclease SbcD, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 400 a.a., Nuclease SbcCD subunit D from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  148 bits (373), Expect = 3e-40
 Identities = 121/406 (29%), Positives = 192/406 (47%), Gaps = 34/406 (8%)

Query: 1   MRFIHTSDWHLGRTLHNQSLLDEQAQMLETLLTLIETHEVDALVIAGDIFDRSVPPAAAV 60
           MR +HTSDWHLG+  +++S   E    L+ LL   +TH+VDA+++AGD+FD   PP+ A 
Sbjct: 1   MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYAR 60

Query: 61  SLLDDFLDKVVQQLKVSVIAIGGNHDGQERLAFGARQMAGAGLYIQGPVRASI--EPVHI 118
           +L + F+   +QQ    ++ + GNHD    L      MA    ++   V AS    P  +
Sbjct: 61  TLYNRFVVN-LQQTGCHLVVLAGNHDSVATLNESRDIMA----FLNTTVVASAGHAPQIL 115

Query: 119 DGKQG--AAFFYPIPYAEPA-LVRHLLNDEDIHSHQDAMAALLAKVTAHNSDG------- 168
             + G   A   PIP+  P  ++        I   Q  +AA+      H +D        
Sbjct: 116 PRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQ 175

Query: 169 -LPKIVISHCFLDGGNESDSERPLSIGGADKISPALFAPFDYAALGHLHGPQ-YKGAEHV 226
            LP I   H    G ++SD+ R + IG  D      F P DY ALGH+H  Q   G EHV
Sbjct: 176 PLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHV 235

Query: 227 RYSGSPLKYSFSEQHQNKSVTLVNILPGQAPDIRLLPIKPQRDVRIIEGYLDALLTRGAS 286
           RY GSP+  SF E  ++K V LV    G+   +  L +   + + +++G L ++  +   
Sbjct: 236 RYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQ--L 293

Query: 287 DPGRD------DYLMVRLLDTHAILEPMAKLRAIYPN----VLHLERTGLMQERALEGPG 336
           +  RD       +L + +     + +   K++A+  +    VL + R+   +ER L    
Sbjct: 294 EQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQ 353

Query: 337 RERMQKSELTMFEDFFTQVQGEPLSGPQKTLMSELI-ASLHREGGQ 381
           RE +  SEL++ E F  ++  E L   Q+  +  L   +LH   G+
Sbjct: 354 RETL--SELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGE 397