Pairwise Alignments

Query, 801 a.a., DNA polymerase II (RefSeq) from Shewanella amazonensis SB2B

Subject, 786 a.a., DNA polymerase II from Pseudomonas putida KT2440

 Score =  625 bits (1612), Expect = 0.0
 Identities = 367/791 (46%), Positives = 482/791 (60%), Gaps = 17/791 (2%)

Query: 19  LLRGRVLTRANVQRSGDTVLEYLIKTVNGPVKVEVHNQRPMAFCHSDDVERLLVEGA-ET 77
           L +G VLTR        T +E+ + T  GP  + +  Q  +AF      E   V  A ET
Sbjct: 3   LQQGFVLTRHWHDTPEGTCVEFWLATDAGPRLLRLAAQESVAFIPQAQAEHARVLLANET 62

Query: 78  EVWSHPLELQSFSRQPVHAIYCRTGLMLKRLVNRAQELGIALYEADIKPEQRFLIERFVA 137
                PL L+ F  +P+  +Y R    L +L  R +  GI ++EADI+P +R+L+ERF+ 
Sbjct: 63  GTKLKPLRLKDFEHRPMLGLYTRQHRQLMQLEQRLRTAGIDVFEADIRPPERYLMERFIT 122

Query: 138 LDAEFFGHFDSSGPSRFVASRVRATSQHIP-LKAVSLDIECSMSGELYSIGLYGDCEPKV 196
              +F G  D+ G  R   ++++    + P L+ VSLDIE S  GELYSI L G  + +V
Sbjct: 123 APVQFTGQPDAQGVYR--DAQLKPQPGYRPALRLVSLDIETSERGELYSIALEGCGQRQV 180

Query: 197 IIVGEGETELTCHRDGVEHKVAVEWACDEVALLLSLQRWFMEVDPDILLGWAVVTFDLSL 256
            ++G    + +    G++  +  E+  D  AL+  L +W    DPD ++GW +V FDL L
Sbjct: 181 YMLGPANGDAS----GLDFDL--EYCADRAALITRLNQWMARHDPDAIIGWNLVQFDLRL 234

Query: 257 LWRRAKHHGMRLCIGRFGKPLAWKVEDKHRPETLDLSGRVVLDGIDWLKAAFYQFDSFAL 316
           L   AK   + L +GR G  +  +          D  GR+++DGI+ L++A + F SF+L
Sbjct: 235 LHEHAKSLQVPLALGRNGAVMTLRSHAGGGHVFADAPGRLLIDGIEALRSATWSFASFSL 294

Query: 317 DRVAGELLGEGKAIHNPDDRGEEITRLFREDKAALAYYNLTDCRLVWDIFQKTDLIHFAL 376
           + VA  LLGEGKAI  P  R +EI R F EDK ALA YNL DC LV  IF  T L+ F L
Sbjct: 295 ENVAQTLLGEGKAIDTPYQRMDEINRRFAEDKPALARYNLKDCELVTRIFAHTRLLDFLL 354

Query: 377 ERARLTGLEFGRVGASIAAFNHLYLPHLHRAGFVAPAMQTVPGPDSPGGYVMDSVPGLYR 436
           ERA +TGL   R G S+AAF HLY+P +HR GFVAP++ + P   SPGG+VMDS PGLY 
Sbjct: 355 ERASVTGLAVDRSGGSVAAFCHLYIPQMHRLGFVAPSLGSRPDEASPGGFVMDSRPGLYD 414

Query: 437 NVLVLDYKSLYPSIIRTFLIDPKGLVLGLSEP-EAMSVEGFRGARFSRQSPILPKLVATL 495
           +VLVLDYKSLYPSIIRTFLIDP GL+ GL +P +A SVEGFRG RFSR    LP +V  +
Sbjct: 415 SVLVLDYKSLYPSIIRTFLIDPVGLIEGLRQPDDAHSVEGFRGGRFSRTQHCLPAIVERV 474

Query: 496 ASRREEAKANQNGPMSQAVKIIMNSLYGVLGSRGCVFHDYRLASSITLRGHEIMRTTKAW 555
              RE AK   N P+SQA+KIIMN+ YGVLGS GC F D RLASSIT+RGH+IMR T++ 
Sbjct: 475 WQGREAAKREGNAPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITMRGHQIMRQTRSL 534

Query: 556 IEAEGFQVIYGDTDSTFVWL--GDEAGNAKATGRALVDMVNQRWREQLREDKGLECFLEL 613
           IEA G+ VIYGDTDSTFVWL       +A   GR LV  VNQ W+  L E   L   LEL
Sbjct: 535 IEACGYDVIYGDTDSTFVWLKGAHAEEDAARIGRELVAKVNQWWQAHLHETMNLHSALEL 594

Query: 614 EFERHFEQFFMPTLRHSTEGSKKRYVGLYDNGN-EKVLVFKGMEQVRSDWSPLARRVQYE 672
           +FE H+ +F MPT+R + EGSKKRY GL    +  + +V+KG+E VR+DWSPLAR+ Q E
Sbjct: 595 QFEVHYRRFLMPTIRGTDEGSKKRYAGLVQRADGAEEMVYKGLESVRTDWSPLARQFQQE 654

Query: 673 LYRRLFQQENLTEYVQEVEKSLYSGELDDELVFHKRLKRDISQYTAKSAPHVKAAALLVS 732
           LY R+F+ E   +YV+E  +   +GE D+ LV+ KRL+R ++ Y     PHV+AA L   
Sbjct: 655 LYGRVFRSEPYRDYVREYVRRTLAGEQDELLVYRKRLRRPLADYQRNVPPHVRAARLADD 714

Query: 733 ATGDANRG---KRGAAIRYLFTKAGAEPLGFQSQPIDYDYYYDRQLLPILEPILAVLKIN 789
                 R    +RG  I Y+ T AG EPL     PIDYD+Y  RQLLP+ + IL  +  +
Sbjct: 715 YNKRLQRPLQYQRGGWISYVITTAGPEPLENLQAPIDYDHYISRQLLPVADAILPFVGDD 774

Query: 790 YQKSGAEQLLL 800
           + +    QLLL
Sbjct: 775 FARLTDHQLLL 785