Pairwise Alignments

Query, 801 a.a., DNA polymerase II (RefSeq) from Shewanella amazonensis SB2B

Subject, 786 a.a., DNA polymerase II from Pseudomonas sp. S08-1

 Score =  642 bits (1656), Expect = 0.0
 Identities = 370/775 (47%), Positives = 486/775 (62%), Gaps = 19/775 (2%)

Query: 19  LLRGRVLTRANVQRSGDTVLEYLIKTVNGPVKVEVHNQRPMAFCHSDDVERLLVE-GAET 77
           L +G VLTR        T +E+ + +  GP +V +  Q  +AF      ER   +   E 
Sbjct: 3   LQQGFVLTRHWRDTPAGTEVEFWLASDAGPRRVRLAPQPSVAFIPEVQRERAEAQLRGER 62

Query: 78  EVWSHPLELQSFSRQPVHAIYCRTGLMLKRLVNRAQELGIALYEADIKPEQRFLIERFVA 137
           +V   PL L+ F ++P+  +YCR+   L +L  + ++ G+ +YEADI+P +RFL+ERF+ 
Sbjct: 63  DVELRPLGLRDFRQRPMLGLYCRSHRQLIKLDKQLRKAGVDVYEADIRPPERFLMERFIT 122

Query: 138 LDAEFFGHFDSSGPSRFVASRVRATSQHIP-LKAVSLDIECSMSGELYSIGLYGDCEPKV 196
               F G     G    + +R++    + P L+  SLDIE S  GELYSI + G  + +V
Sbjct: 123 APVSFGGTPGEDGT--LLDARLKPDDSYRPTLRLASLDIETSERGELYSIAIEGCGQRQV 180

Query: 197 IIVGEGETELTCHRDGVEHKVAVEWACDEVALLLSLQRWFMEVDPDILLGWAVVTFDLSL 256
            ++G    E+    D       +E+      LL  L  W  E DPD ++GW +V FDL +
Sbjct: 181 YMLG-ARPEVAPEVD-----FDLEYCSSRAELLQRLNGWLAEHDPDAIIGWNLVQFDLRV 234

Query: 257 LWRRAKHHGMRLCIGRFGKPLAWKVEDKHRPETLDLSGRVVLDGIDWLKAAFYQFDSFAL 316
           L R A    + L  GR G+P+ W+    H       +GR+++DGI+ L++A + F SF+L
Sbjct: 235 LQRHAAELQVPLLFGRGGEPMEWREHASHNHYFAAAAGRLIIDGIEALRSATWSFPSFSL 294

Query: 317 DRVAGELLGEGKAIHNPDDRGEEITRLFREDKAALAYYNLTDCRLVWDIFQKTDLIHFAL 376
           + VA  LLGEGKAI  P  R +EI R+F ED+ ALA YNL DC LV  IF  T LI F L
Sbjct: 295 ENVAQTLLGEGKAIDTPYQRMDEINRMFAEDQPALARYNLKDCELVTRIFAHTRLIDFLL 354

Query: 377 ERARLTGLEFGRVGASIAAFNHLYLPHLHRAGFVAPAMQTVPGPDSPGGYVMDSVPGLYR 436
           ERA  TGL   R G S+AAF HLYLP +HR GFVAP +       SPGG+VMDS PGLY 
Sbjct: 355 ERAATTGLPADRSGGSVAAFTHLYLPAMHRMGFVAPNLGEKMPQASPGGFVMDSRPGLYE 414

Query: 437 NVLVLDYKSLYPSIIRTFLIDPKGLVLGLSEP-EAMSVEGFRGARFSRQSPILPKLVATL 495
           +VLVLDYKSLYPSIIRTFLIDP GL+ GL EP +  SVEGFRGARFSR    LP +V  +
Sbjct: 415 SVLVLDYKSLYPSIIRTFLIDPVGLIEGLREPDDEHSVEGFRGARFSRTRHCLPAIVERV 474

Query: 496 ASRREEAKANQNGPMSQAVKIIMNSLYGVLGSRGCVFHDYRLASSITLRGHEIMRTTKAW 555
              RE AK   N P+SQA+KIIMN+ YGVLGS GC F D RLASSITLRGH IM+ T+  
Sbjct: 475 WQGREAAKREGNAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITLRGHAIMKRTREL 534

Query: 556 IEAEGFQVIYGDTDSTFVWLGDEAG--NAKATGRALVDMVNQRWREQLREDKGLECFLEL 613
           IEAEG++VIYGDTDSTFVWLG E    +A   GRALV  VNQ WRE LRE+ GLE  LEL
Sbjct: 535 IEAEGYRVIYGDTDSTFVWLGHEHAEEDAARIGRALVARVNQWWREHLREEMGLESALEL 594

Query: 614 EFERHFEQFFMPTLRHSTEGSKKRYVGLY--DNGNEKVLVFKGMEQVRSDWSPLARRVQY 671
           ++E H+ +F MPT+R + EGSKKRY GL    +G+E+ +VFKG+E VR+DWSPLA+R Q 
Sbjct: 595 QYESHYRRFLMPTVRGAEEGSKKRYAGLVRRADGSEE-MVFKGLETVRTDWSPLAQRFQQ 653

Query: 672 ELYRRLFQQENLTEYVQEVEKSLYSGELDDELVFHKRLKRDISQYTAKSAPHVKAAALL- 730
           ELYR +F+++   +Y+++  +   +GELD+ L++ KRL+R +  Y     PHV+AA L  
Sbjct: 654 ELYRLIFERKPHQDYIRDYVRRTLAGELDELLIYRKRLRRKLGDYERNVPPHVRAARLAD 713

Query: 731 --VSATGDANRGKRGAAIRYLFTKAGAEPLGFQSQPIDYDYYYDRQLLPILEPIL 783
                 G   + +RG +I YL T AG EPL  ++  IDY++Y  RQL PI + IL
Sbjct: 714 EHNDRLGRPRQYQRGGSISYLITVAGPEPLETRAAAIDYEHYLTRQLQPIADAIL 768