Pairwise Alignments

Query, 801 a.a., DNA polymerase II (RefSeq) from Shewanella amazonensis SB2B

Subject, 785 a.a., DNA polymerase II from Pseudomonas fluorescens SBW25

 Score =  630 bits (1625), Expect = 0.0
 Identities = 361/777 (46%), Positives = 479/777 (61%), Gaps = 24/777 (3%)

Query: 19  LLRGRVLTRANVQRSGDTVLEYLIKTVNGPVKVEVHNQRPMAF---CHSDDVERLLVEGA 75
           L +G VLTR        T + + + T  GP  + +  Q  + F    H   ++ LL    
Sbjct: 3   LQQGFVLTRHWRDTPTGTEVSFWLATDQGPRFIRLPVQTSVMFVPEAHRKPLDWLLK--G 60

Query: 76  ETEVWSHPLELQSFSRQPVHAIYCRTGLMLKRLVNRAQELGIALYEADIKPEQRFLIERF 135
           E ++   PL+L  F  +PV  +Y R       +  R +  G+ +YE D++P +R+++ERF
Sbjct: 61  ERDIELRPLQLCDFHHRPVLGLYTRQHRQAMDVEKRLRAAGVDVYEGDVRPPERYMMERF 120

Query: 136 VALDAEFFGHFDSSGPSRFVASRVRATSQHIPLKAVSLDIECSMSGELYSIGLYGDCEPK 195
           +     F G  D+SG     A    A     PLK VSLDIE +  G+LYSI L G  E +
Sbjct: 121 ITAPVWFGGTPDTSGVL-CDAQMKPAPDYRPPLKLVSLDIETTAQGDLYSIALEGCGERQ 179

Query: 196 VIIVGEGETELTCHRDGVEHKVAVEWACDEVALLLS-LQRWFMEVDPDILLGWAVVTFDL 254
           V ++G          D V+ K+     CD  A LL  L  W  + DPD ++GW VV FDL
Sbjct: 180 VYMLGPPNKT-----DAVDFKLDY---CDTRAQLLERLNEWLAQHDPDAIIGWNVVQFDL 231

Query: 255 SLLWRRAKHHGMRLCIGRFGKPLAWKVEDKHRPETLDLSGRVVLDGIDWLKAAFYQFDSF 314
            +L   A+   + L +GR  +P+AW+            +GR+++DGI+ L++A + F+SF
Sbjct: 232 RVLHEHAQRLNVPLMLGRGDEPMAWREHGSRNHYFAAAAGRLIIDGIEALRSATWSFESF 291

Query: 315 ALDRVAGELLGEGKAIHNPDDRGEEITRLFREDKAALAYYNLTDCRLVWDIFQKTDLIHF 374
           +L+ VA  LLGEGK I  P  R +EI R+F EDK ALA YNL DC LV  IF+KT+L+ F
Sbjct: 292 SLENVAQTLLGEGKDISTPYQRMDEINRMFAEDKPALARYNLKDCELVTRIFEKTELLKF 351

Query: 375 ALERARLTGLEFGRVGASIAAFNHLYLPHLHRAGFVAPAMQTVPGPDSPGGYVMDSVPGL 434
            LERA +TGL   R G S+AAF HLY+P +HR GFVAP +   P   SPGG+VMDS PGL
Sbjct: 352 LLERASVTGLPADRNGGSVAAFTHLYMPLMHRQGFVAPNLGDKPPQASPGGFVMDSRPGL 411

Query: 435 YRNVLVLDYKSLYPSIIRTFLIDPKGLVLGLSEP-EAMSVEGFRGARFSRQSPILPKLVA 493
           Y +VLVLDYKSLYPSIIR+FLIDP GL+ GL  P ++ SVEGFRGARFSR    LP +VA
Sbjct: 412 YESVLVLDYKSLYPSIIRSFLIDPVGLIEGLKYPDDSDSVEGFRGARFSRTRHCLPAIVA 471

Query: 494 TLASRREEAKANQNGPMSQAVKIIMNSLYGVLGSRGCVFHDYRLASSITLRGHEIMRTTK 553
            ++  RE AK   N P+SQA+KIIMN+ YGVLGS GC F D RLASSIT+RGH+IMR T+
Sbjct: 472 RVSEGREVAKREHNAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITMRGHQIMRQTR 531

Query: 554 AWIEAEGFQVIYGDTDSTFVWLGDEAGNAKAT--GRALVDMVNQRWREQLREDKGLECFL 611
             +EA+G++VIYGDTDSTFVWLG      +A+  GR LV  VN  WRE L    GL+  L
Sbjct: 532 ELVEAQGYEVIYGDTDSTFVWLGSAHSQEEASRIGRGLVQHVNDWWREHLHTTFGLQSAL 591

Query: 612 ELEFERHFEQFFMPTLRHSTEGSKKRYVGLY--DNGNEKVLVFKGMEQVRSDWSPLARRV 669
           EL++E HF +F MPT+R + EGSKKRY GL    +G+E  +V+KG+E VRSDWSPLARR 
Sbjct: 592 ELQYETHFTRFLMPTIRGAEEGSKKRYAGLVVRSDGSED-MVYKGLETVRSDWSPLARRF 650

Query: 670 QYELYRRLFQQENLTEYVQEVEKSLYSGELDDELVFHKRLKRDISQYTAKSAPHVKAAAL 729
           Q ELY+R+F ++   +Y+++  +   SGE D+ L++ KRL+R +  Y     PHV+AA L
Sbjct: 651 QQELYQRIFHRQPHQDYIRDYVRRTLSGEFDELLIYRKRLRRRLDDYERNVPPHVRAARL 710

Query: 730 LVSATGDANRGK---RGAAIRYLFTKAGAEPLGFQSQPIDYDYYYDRQLLPILEPIL 783
                   NR +   RG  I Y+ +  G EPL  +  PIDYD+Y  RQL P+ + IL
Sbjct: 711 ADEYNDRLNRPRQYQRGGWISYVISVNGPEPLEVRQAPIDYDHYVTRQLQPVADAIL 767