Pairwise Alignments

Query, 801 a.a., DNA polymerase II (RefSeq) from Shewanella amazonensis SB2B

Subject, 783 a.a., DNA polymerase II from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  644 bits (1661), Expect = 0.0
 Identities = 366/784 (46%), Positives = 489/784 (62%), Gaps = 31/784 (3%)

Query: 22  GRVLTRANVQRSGDTVLEYLIKTVNGPVKVEVHNQRPMAFCHSDDVERL--LVEGAETEV 79
           G +LTR        T + + + T NGP++V +  Q  +AF  +D V R   +++G E   
Sbjct: 5   GFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQG-EQGF 63

Query: 80  WSHPLELQSFSRQPVHAIYCRTGLMLKRLVNRAQELGIALYEADIKPEQRFLIERFVALD 139
              PL L+ F RQPV+ +YCR    L     R +E G+ +YEAD++P +R+L+ERF+   
Sbjct: 64  RLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSP 123

Query: 140 AEFFGHFDSSGPSRFVASRVRATSQHIP-LKAVSLDIECSMSGELYSIGLYGDCEPKVII 198
               G   +      V +R++    + P LK VS+DIE +  GELY IGL G C  +++ 
Sbjct: 124 VWVEGDMHNG---TIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEG-CGQRIVY 179

Query: 199 VGEGETELTCHRDGVEHKVAVEWACDEVALLLSLQRWFMEVDPDILLGWAVVTFDLSLLW 258
           +   E     + D       +E+      LL  L  WF   DPD+++GW VV FDL +L 
Sbjct: 180 MLGPE-----NGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQ 234

Query: 259 RRAKHHGMRLCIGRFGKPLAWKVED-KHRPETLDLSGRVVLDGIDWLKAAFYQFDSFALD 317
           + A+ + + L +GR    L W+    K+        GR+++DGI+ LK+AF+ F SF+L+
Sbjct: 235 KHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLE 294

Query: 318 RVAGELLGEGKAIHNPDDRGEEITRLFREDKAALAYYNLTDCRLVWDIFQKTDLIHFALE 377
            VA ELLGEGK+I NP DR +EI R F EDK ALA YNL DC LV  IF KT+++ F LE
Sbjct: 295 TVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLE 354

Query: 378 RARLTGLEFGRVGASIAAFNHLYLPHLHRAGFVAPAMQTVPGPDSPGGYVMDSVPGLYRN 437
           RA + GL   R G S+AAF HLY P +HRAG+VAP +  VP   SPGGYVMDS PGLY +
Sbjct: 355 RATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDS 414

Query: 438 VLVLDYKSLYPSIIRTFLIDPKGLVLGLSEPE-AMSVEGFRGARFSRQSPILPKLVATLA 496
           VLVLDYKSLYPSIIRTFLIDP GLV G+++P+   S EGF  A FSR+   LP++V  + 
Sbjct: 415 VLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIW 474

Query: 497 SRREEAKANQNGPMSQAVKIIMNSLYGVLGSRGCVFHDYRLASSITLRGHEIMRTTKAWI 556
             R+EAK   N P+SQA+KIIMN+ YGVLG+  C F D RLASSIT+RGH+IMR TKA I
Sbjct: 475 HGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALI 534

Query: 557 EAEGFQVIYGDTDSTFVWLGDEAGNAKAT--GRALVDMVNQRWREQLREDKGLECFLELE 614
           EA+G+ VIYGDTDSTFVWL       +A   GRALV  VN  W E L++ + L   LELE
Sbjct: 535 EAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQR-LTSALELE 593

Query: 615 FERHFEQFFMPTLRHSTEGSKKRYVGLYDNGNEKVLVFKGMEQVRSDWSPLARRVQYELY 674
           +E HF +F MPT+R +  GSKKRY GL   G+++ +VFKG+E VR+DW+PLA++ Q ELY
Sbjct: 594 YETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELY 653

Query: 675 RRLFQQENLTEYVQEVEKSLYSGELDDELVFHKRLKRDISQYTAKSAPHVKAAALLVSAT 734
            R+F+ E   EYV++    L +GELD  LV+ KRL+R +S+Y     PHV+AA L     
Sbjct: 654 LRIFRNEPYQEYVRQTIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARL----- 708

Query: 735 GDANRGKRG--------AAIRYLFTKAGAEPLGFQSQPIDYDYYYDRQLLPILEPILAVL 786
            D    KRG          I+Y++T  G EPL +Q  P+DY++Y  RQL P+ E IL  +
Sbjct: 709 ADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFI 768

Query: 787 KINY 790
           + N+
Sbjct: 769 EDNF 772