Pairwise Alignments

Query, 257 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 259 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  251 bits (641), Expect = 1e-71
 Identities = 130/257 (50%), Positives = 171/257 (66%), Gaps = 5/257 (1%)

Query: 2   ELLQDPTSLLLLALVGLIAGFIDAVVGGGGLLSIPALLSFGLPPHQALGTNKLSACFGSA 61
           EL  D T+L +LA+V  IAGFIDA+ GGGGLL+ PALL+ G+PPH  LGTNKLS+ FGSA
Sbjct: 4   ELSVDLTTLAILAIVAFIAGFIDAIAGGGGLLTTPALLTAGMPPHLVLGTNKLSSTFGSA 63

Query: 62  TAAWTYYRQQLLTPTFWRHSAAATFIGALLGTIAVYLTDAGILQKLLPLIIMAIALYTLI 121
           TA++T+YR++L  P  W H+   T +GAL G +  +   A  L K+LP+I+ A  +Y L 
Sbjct: 64  TASFTFYRRKLFHPRQWVHAIVGTLVGALTGAVVAHYLPAETLNKMLPVIVFACGVYLLF 123

Query: 122 KPAAIEHPKAQ-EPQAPASTKHQWMQGVPLGFYDGYAGPGIGAFWTLSSSRLYRLPVLQN 180
                  PKA  +  AP   K Q  QG  LGFYDG AGPG GAFWT+S+  L+ + +++ 
Sbjct: 124 GGT----PKAPLDADAPIKKKWQSTQGFSLGFYDGVAGPGTGAFWTVSTMLLHPIDLVKA 179

Query: 181 CALARAMTLISNITALSVFMIFGQVDIAVGLFLGASMMAGAYLGARSAIHFGLPFIRPVF 240
             +AR+M  +SN  AL+VF+I G VD  VGL +G S+M GA+ GARSAI  G  FIRPVF
Sbjct: 180 SGVARSMNFVSNAAALTVFIINGSVDWIVGLAMGISVMCGAFFGARSAISGGAKFIRPVF 239

Query: 241 ILIVFAASTQLAWRAWF 257
           I +V   + +LAW+ WF
Sbjct: 240 ITVVLGLTVRLAWQHWF 256