Pairwise Alignments

Query, 854 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella amazonensis SB2B

Subject, 883 a.a., DNA mismatch repair protein, MutS family from Agrobacterium fabrum C58

 Score =  554 bits (1427), Expect = e-162
 Identities = 354/892 (39%), Positives = 513/892 (57%), Gaps = 64/892 (7%)

Query: 15  MMRQYLTMKAAHPDMLLFYRMGDFYELFYDDAKRASEMLSISLTARGKSGGDPIPMAGIP 74
           MM QY+ +KA +P  LLFYRMGDFYELF+DDA  AS  L I+LT RG+  G  IPM G+P
Sbjct: 1   MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60

Query: 75  YHAVEGYLAKLVQLGQSVAICEQIGDPATAK-----GPVERKVVRVVTPGTLTDEALLQE 129
            HA + YL KL+  G  VA+CEQI DPA AK       V+R VVR+VTPGTLT+E LL  
Sbjct: 61  VHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120

Query: 130 RQDNLLAAVYQ----GKVGYGFATLDVASGRFVIAELPSREALEAELQRTSPAELLYSED 185
            + N L A+ +     +  +  A +D+++G F +AE      L A++ R  P EL+ ++ 
Sbjct: 121 TESNYLMALARIRGSAEAQFALAWIDISTGVFRLAETTLTRLL-ADIWRIDPRELIVADS 179

Query: 186 -FGDMGL--INHIRGKRRRPEWEFDYDTCIK--MLLEQFGTRDLRGFGIADARLSLQAAG 240
            F D  L  +  + G+   P+    +D+ +    +   F    L GFG   +R+ + AA 
Sbjct: 180 LFHDEELRPVFDVLGRVAVPQPAILFDSAVAEGRIARYFNVSTLDGFGTF-SRVEMAAAA 238

Query: 241 CLMQYVKDTQRTALPHINSIVRFNQGDSIILDAATRRNLELTVSLSGSRENTLASVLDNT 300
             + YV+ TQ    P + +  R +   ++ +D ATR NLEL  +LSG R+ +L   L+ T
Sbjct: 239 AAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSLLHALNRT 298

Query: 301 VTAMGSRMLQRWIHQPLRCHDTIRGRQQAVQELLE-TGLYEDLRAELKALGDIERILARL 359
           VT  G+R+L   +  PL   + I  R  AV  L++   L + LR  LK + D+ R L+RL
Sbjct: 299 VTGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRL 358

Query: 360 ALRSARPRDFARLRDAL------------GILPLIRERLQRCDARHLKSLNILLGDFPEE 407
           AL    PRD   +R  L            G+LP   + L    A+ L+ L  L G     
Sbjct: 359 ALERGGPRDLGAIRQGLVSAEKIAVILDGGLLP---DEL----AKALRDLKALPGALEA- 410

Query: 408 YELLCRAIVDNPPVLIRDGGVIREGYDSELDEWRKLSDGGIDYLEQMELREKERTGIATL 467
             +L   + D+ P+L RDGG +REG + ELDE R L D     +  ++L+  + TGI +L
Sbjct: 411 --MLGSMLADDLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKSL 468

Query: 468 KVGFNRVHGYYIEVSRAQSALVPIA------YQRRQTLKNTERYITPELKEYEEKVLSSQ 521
           K+  N V GY+IEV+   + ++         +  RQT+    R+ T EL + E ++ ++ 
Sbjct: 469 KIKHNNVLGYFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAA 528

Query: 522 GKALALEKQLWEELFDLILPKLQELQDFALAASELDVLANFADRADLFNYHCPELSDTTG 581
            +AL +E + +E + + ++ + + ++  ALA + +DV ++ A  A    Y  P +  +  
Sbjct: 529 AEALTMELEAFERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMT 588

Query: 582 ILIEAGRHPVVE----RVSQSPFIPNPVELS-----NHRRMLIVTGPNMGGKSTYMRQVA 632
             I+ GRHPVVE    R S  PFI N  +LS      +  + ++TGPNMGGKST++RQ A
Sbjct: 589 FSIKGGRHPVVEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQNA 648

Query: 633 LITLMAHIGSFVPAERALIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANS 692
           LI ++A IGSFVPAE A IG VDR+F+R+GASDDLA GRSTFMVEM ETA IL+ AT  S
Sbjct: 649 LIAILAQIGSFVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRS 708

Query: 693 LVLMDEIGRGTSTYDGMSLAWSAAEYLAQKLGAMTLFATHYFELTQLPEMLPGVHNVHLD 752
           LV++DEIGRGT+T+DG+S+AW+A E+L +      LFATH+ ELT L E L  + N  + 
Sbjct: 709 LVILDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMR 768

Query: 753 AIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPANVIKAAKHKLLQLESRDHGVDMSKQ 812
             E +  + F+H V  GAA +SYG+QVA LAG+PA+V++ A+  L +LE  D     S+ 
Sbjct: 769 VKEWEGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQL 828

Query: 813 -QALPL---------TMTPEPSAAELRLEAIDPNDLSPRQALELLFELKRLL 854
              LPL         T    PS  E  L++ +P++++PR+AL+ L+ LK+ L
Sbjct: 829 IDDLPLFQIAVRREETRKAGPSKVEEALKSFNPDEMTPREALDALYALKKEL 880