Pairwise Alignments

Query, 327 a.a., RNA polymerase sigma-38 factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

 Score =  446 bits (1147), Expect = e-130
 Identities = 235/325 (72%), Positives = 267/325 (82%)

Query: 2   SLKNNTLVAEKLVDFSGKEADTDTNMDGEEVSLVQDLELEQQVQDDLQRNLDATQLYLSE 61
           +LK + L  +   D +G E   +  +  +E S     E E   Q   QR LDATQLYL E
Sbjct: 5   TLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGE 64

Query: 62  IGFSPLLTAEEEVYYSRKALRGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGN 121
           IG+SPLLTAEEEVY++R+ALRG   SR RMIESNLRLVVKIARRY NRGLALLDLIEEGN
Sbjct: 65  IGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGN 124

Query: 122 LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARE 181
           LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH+VKELNVYLRTARE
Sbjct: 125 LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARE 184

Query: 182 LAHKLDHEPTAEEIAAKLNLPSVEVSRMLKLNEKITSVDVPLGGDNDKALLDVLPDDDSV 241
           L+HKLDHEP+AEEIA +L+ P  +VSRML+LNE+ITSVD PLGGD++KALLD+L D+   
Sbjct: 185 LSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKEN 244

Query: 242 GPDYKVQDEDISNSVVNWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQ 301
           GP+   QD+D+  S+V WL ELN KQREVLARRFGLLGYE +TLEDVG EIGLTRERVRQ
Sbjct: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304

Query: 302 IQVEALKRLRDILSAQGLSVEALFR 326
           IQVE L+RLR+IL  QGL++EALFR
Sbjct: 305 IQVEGLRRLREILQTQGLNIEALFR 329