Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 493 a.a., Transcription termination protein NusA from Pseudomonas fluorescens GW456-L13

 Score =  622 bits (1605), Expect = 0.0
 Identities = 324/495 (65%), Positives = 401/495 (81%), Gaps = 3/495 (0%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60
           M+KE+LLV E+VSNEK VP   IFEALE ALATATKK++E ++D+RV I+R TG YETFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFR 60

Query: 61  RWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQ 120
           RW VVE+    L++P  E         +P  +VG+ +E++IES+ F RI  QTAKQVIVQ
Sbjct: 61  RWTVVEEAD--LDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQ 118

Query: 121 KVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPG 180
           KVREAERAQVV+ + ++ GEII+G VKK  RD+VIVDLGNNA+ +L +ED+I+RE+FR G
Sbjct: 119 KVREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVG 178

Query: 181 DRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKI 240
            R+RALL  +R E RG QL L+RT PEMLIELFR+EVPEIA+ +I+VM A+RDPGSRAKI
Sbjct: 179 VRLRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKI 238

Query: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300
           AV+S D+RIDP GAC+GMRG+RVQAVS ELGGERVDIVLWDDNPAQFVINAM+PA+VA+I
Sbjct: 239 AVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAI 298

Query: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVV 360
           IVDED H+MDIAV AD+LAQAIGR GQNVRLA+QLTGW LNVMT +D+ AK QAE+  ++
Sbjct: 299 IVDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDIL 358

Query: 361 ALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAIST 420
             F+  L+VDE+ AQVL DEGFTSLEE+AYVP+ E+L IDGFDE+IV  LR RAK  + T
Sbjct: 359 RNFIDELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLT 418

Query: 421 RALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEE 480
           +A+A+EE L  A P+E+LL+LEGMD+ LA  LA RGV+T EDLAEQ IDDL++I+ + ++
Sbjct: 419 KAIATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDD 478

Query: 481 KAGALIMAARNICWF 495
           +AG LIMAAR   WF
Sbjct: 479 RAGKLIMAAR-AHWF 492