Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 491 a.a., transcription termination/antitermination protein NusA from Ralstonia solanacearum PSI07

 Score =  498 bits (1281), Expect = e-145
 Identities = 254/495 (51%), Positives = 365/495 (73%), Gaps = 5/495 (1%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60
           M++E+LL+ +A++ EK V ++ +F ALE ALA+ATKK++E D++VRVAIDR++G++ETFR
Sbjct: 1   MSREVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFR 60

Query: 61  RWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQ 120
           RW+VV D+   L+ P ++I L  A+ +NP++ + EFIE++IESV F RI  Q AKQVI+Q
Sbjct: 61  RWLVVPDDA-GLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQ 119

Query: 121 KVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPG 180
           ++R+AER Q++  + D+  +I+TG +K++++  +IV+ G   + +L ++ +I +E+ R G
Sbjct: 120 RIRDAEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGR-VEALLARDQMIPKENLRTG 178

Query: 181 DRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKI 240
           DRVRA +  V   ARG Q+ L+RT PE LI+LF  EVPE+   ++++  AARDPG RAKI
Sbjct: 179 DRVRAYILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKI 238

Query: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300
           AV ++D+RIDPIG CVG+RG RV AV NE+GGE VDIVLW ++PAQFVI A+APA V SI
Sbjct: 239 AVVAHDKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSI 298

Query: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVV 360
           +VDE+ HSMD+ V+ ++LA AIGR+GQNVRLA++LTGW++N+MT  +   K + ES+ V 
Sbjct: 299 VVDEEKHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQEEESSAVR 358

Query: 361 ALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAIST 420
            LFM  LDVDE+ A +L +EGFTSLEEVAYVP+ E+L I+ FDED V  LR RA+  + T
Sbjct: 359 KLFMEKLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLT 418

Query: 421 RALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEE 480
             LA EE ++  + S++L +LEG+   L   LA   + T +DLAE  +D+L+++  + EE
Sbjct: 419 MELAKEEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMTGVDEE 476

Query: 481 KAGALIMAARNICWF 495
           +A ALIM AR   WF
Sbjct: 477 QAKALIMKARE-HWF 490