Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 488 a.a., Transcription termination/antitermination protein NusA from Methylophilus sp. DMC18

 Score =  487 bits (1254), Expect = e-142
 Identities = 256/500 (51%), Positives = 354/500 (70%), Gaps = 18/500 (3%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60
           M++E+LL+ +A+++EK V +E IF ALE ALA+ATKK +E   D+RV IDR+TGDY+TFR
Sbjct: 1   MSRELLLLVDALAHEKNVDKEVIFTALELALASATKKNHEEGADIRVEIDRETGDYKTFR 60

Query: 61  RWMVVEDNGEALENPYREITLEAAQYENPEI-----QVGEFIEDEIESVVFDRITTQTAK 115
           RW  VE         Y  +   A Q++  +      Q+G++ E+ +ES+ F RI  Q AK
Sbjct: 61  RWQYVE---------YDLLESSAYQFDEEDERAAGRQIGDYYEEPLESISFGRIGAQAAK 111

Query: 116 QVIVQKVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARE 175
           QVI+QKVREAER Q+++ F  +   ++TGV+K+  + + I+++G   + +L +E +I +E
Sbjct: 112 QVILQKVREAEREQMIQDFLARGESLVTGVIKRMEKGNAIIEVGR-IECLLPREAMIQKE 170

Query: 176 SFRPGDRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPG 235
           + R GDRVRA L  V    RG QL L+R  PE L  LF +EVPEI + ++++  AARDPG
Sbjct: 171 NLRVGDRVRAYLSRVDRGGRGPQLILSRVAPEFLKRLFELEVPEIEEGLLEIRSAARDPG 230

Query: 236 SRAKIAVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPA 295
            R+KIAVK+ND+R+DP+G CVGMRG+RVQAV++ELGGERVDIVLW  +PAQFVINA+APA
Sbjct: 231 LRSKIAVKTNDQRLDPVGTCVGMRGSRVQAVTSELGGERVDIVLWSMDPAQFVINALAPA 290

Query: 296 DVASIIVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAE 355
           +V SI+VDED HSMD+ V  + LA AIGRNGQNVRLA++LTGW LN++T      K Q E
Sbjct: 291 EVTSIVVDEDAHSMDVVVNEEQLAVAIGRNGQNVRLASELTGWNLNILTEEAAAQKSQDE 350

Query: 356 SAKVVALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAK 415
            AK+  LF+  LDVDE+ A +L  EGF++LEE+AYVP+AE+  I+ FDED +  LR RA+
Sbjct: 351 YAKISQLFIEKLDVDEEVADILVQEGFSTLEEIAYVPLAEMAEIEAFDEDTINELRSRAR 410

Query: 416 AAISTRALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIE 475
           AA+ T A+A EE ++  E + +L+ L+GMD   A  LA+  + T EDLAE  +D+L+E+ 
Sbjct: 411 AALLTEAIAKEEKVE--EDTNDLMTLDGMDADTAHKLAASEIHTSEDLAELAVDELVELT 468

Query: 476 ELTEEKAGALIMAARNICWF 495
            + EE+A +LIM AR   WF
Sbjct: 469 GIDEERAKSLIMTAR-APWF 487