Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 502 a.a., transcription termination/antitermination protein NusA from Serratia liquefaciens MT49

 Score =  711 bits (1836), Expect = 0.0
 Identities = 358/506 (70%), Positives = 434/506 (85%), Gaps = 11/506 (2%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60
           MNKEIL V EAVSNEK++PREKIFEALETALATATKKKYE +I+VRV+IDRKTGD++TFR
Sbjct: 1   MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFR 60

Query: 61  RWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQ 120
           RW+ V++    +  P REITLEAAQYE P I++G +IED+IESV FDRITTQTAKQVIVQ
Sbjct: 61  RWVAVDE----VTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQ 116

Query: 121 KVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPG 180
           KVREAERA VV+ F   EGEI+TGVVKK NRDS+ +DLG+NA+ V+ +ED++ RE+FRPG
Sbjct: 117 KVREAERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPG 176

Query: 181 DRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKI 240
           DR+R +LYAVRPEARGAQL+++R+  EML ELFR+EVPEI +E+I++  AARDPGSRAKI
Sbjct: 177 DRIRGILYAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236

Query: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300
           AVK+ND+RIDP+GACVGMRGARVQAVS+ELGGER+DI+LWDDNPAQFVINAMAPADVASI
Sbjct: 237 AVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASI 296

Query: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQL-------TGWELNVMTVADMNAKHQ 353
           +VDEDN +MDIAVEA +LAQAIGRNGQNVRLA+QL         WELNVMT  D+ AKHQ
Sbjct: 297 VVDEDNCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQ 356

Query: 354 AESAKVVALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRER 413
           AE+   +  F   LD+DEDFA VL +EGF++LEE+AYVP+ ELL IDG DED+VEALR+R
Sbjct: 357 AEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDR 416

Query: 414 AKAAISTRALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIE 473
           AKAA++T ALA EE+L   +P+++LLNL G++R +AF LA+RGV TLEDLAEQG+DDL +
Sbjct: 417 AKAALTTLALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLAD 476

Query: 474 IEELTEEKAGALIMAARNICWFGEES 499
           IE L++E+AG LIMAARNICWFG+ +
Sbjct: 477 IEGLSDEQAGELIMAARNICWFGDNA 502