Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 359 a.a., transcription termination/antitermination protein NusA from Fusobacterium nucleatum SB010

 Score =  228 bits (581), Expect = 3e-64
 Identities = 120/345 (34%), Positives = 207/345 (60%), Gaps = 5/345 (1%)

Query: 2   NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFRR 61
           +K  L   + +  EK + +E + EA+E AL  A KK Y  D +V V +DR+ GD + F  
Sbjct: 6   SKNFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVTVDRENGDIKVFAS 65

Query: 62  WMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQK 121
             VV    + L +P  EI+LE A+     +++G+ ++ E++   F R   Q  KQ+++QK
Sbjct: 66  KTVVA--ADDLLDPNEEISLEDAKKIKKRVKIGDILKFEVDCENFRRNAVQNGKQIVIQK 123

Query: 122 VREAERAQVVEQFYDKEGEIITGVVKK-SNRDSVIVDLGNNADGVLYKEDLIARESFRPG 180
           VREAER  +  +F ++E  I+TG++++  NR ++ +++ +  + +L   +    + +R G
Sbjct: 124 VREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEI-DGVELILPPAEQSVSDIYRVG 182

Query: 181 DRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKI 240
           +R++  + +V   ++  ++ ++R    +L +LF +E+PEI   +I++   AR+ GSRAK+
Sbjct: 183 ERIKVYVLSVEKTSKFPKILISRRNEGLLRKLFEIEIPEITSGIIEIKSVAREAGSRAKV 242

Query: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300
           AV S    ID IGAC+G +GAR++ + +EL GER+DIV W     +FV   ++PA V S+
Sbjct: 243 AVYSAVPNIDTIGACIGQKGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVESV 302

Query: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTV 345
            + ED  +  + VE   L+ AIG+NGQN RLA +LTG  +++  +
Sbjct: 303 TILEDG-TARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVI 346