Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 501 a.a., transcription termination/antitermination protein NusA from Erwinia amylovora T8

 Score =  718 bits (1854), Expect = 0.0
 Identities = 356/505 (70%), Positives = 442/505 (87%), Gaps = 10/505 (1%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60
           MNKEIL V EAVSNEK++PREKIFEALE+ALATATKKKYE +IDVRV+IDRK+GD++TFR
Sbjct: 1   MNKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFR 60

Query: 61  RWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQ 120
           RW++V++    +  P REITLEAA YE+  + +G F+ED+IESV FDRITTQTAKQVIVQ
Sbjct: 61  RWLIVDE----VTQPTREITLEAALYEDESLSLGGFVEDQIESVTFDRITTQTAKQVIVQ 116

Query: 121 KVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDL------GNNADGVLYKEDLIAR 174
           KVREAERA VV+QF ++EGEIITGVVKK NRD++ +++        NA+ V+ +ED++ R
Sbjct: 117 KVREAERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSNTNAEAVIIREDMLPR 176

Query: 175 ESFRPGDRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDP 234
           E+FRPGDR+R +LYAVRPEARGAQL+++R+KPEMLIELFR+EVPEIA+E++++  AARDP
Sbjct: 177 ENFRPGDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDP 236

Query: 235 GSRAKIAVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAP 294
           GSRAKIAVK+ND+RIDP+GACVGMRGARVQAVS+ELGGER+DIVLWDDNPAQFVINAMAP
Sbjct: 237 GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAP 296

Query: 295 ADVASIIVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQA 354
           ADVASI+VDEDNH+MDIAVEA +LAQAIGRNGQNVRLA+QL+GW+LNVMTV D+ AKHQA
Sbjct: 297 ADVASIVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQA 356

Query: 355 ESAKVVALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERA 414
           E+   + +F   LD+DEDFA +L +EGF+SLEE+AYVP+ ELL IDG DE+ VEALR+RA
Sbjct: 357 EAHAAIDVFTKHLDIDEDFATLLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRA 416

Query: 415 KAAISTRALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEI 474
           K A++T ALA EE+L   +P+E+LL+LEG++R LAF LA++GV TLEDLAEQG+DDL +I
Sbjct: 417 KNALTTLALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDI 476

Query: 475 EELTEEKAGALIMAARNICWFGEES 499
           + L+ E+AG LIMAARNICWFG+++
Sbjct: 477 DGLSNERAGELIMAARNICWFGDDA 501