Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC101

 Score =  734 bits (1894), Expect = 0.0
 Identities = 367/499 (73%), Positives = 439/499 (87%), Gaps = 4/499 (0%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60
           MNKEIL V EAVSNEKA+PREKIFEALE+ALATATKKKYE +IDVRV IDRK+GD++TFR
Sbjct: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60

Query: 61  RWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQ 120
           RW+VV++    +  P +EITLEAA+YE+  + +G+++ED+IESV FDRITTQTAKQVIVQ
Sbjct: 61  RWLVVDE----VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ 116

Query: 121 KVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPG 180
           KVREAERA VV+QF + EGEIITGVVKK NRD++ +DLGNNA+ V+ +ED++ RE+FRPG
Sbjct: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176

Query: 181 DRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKI 240
           DRVR +LY+VRPEARGAQL++TR+KPEMLIELFR+EVPEI +E+I++  AARDPGSRAKI
Sbjct: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236

Query: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300
           AVK+ND+RIDP+GACVGMRGARVQAVS ELGGER+DIVLWDDNPAQFVINAMAPADVASI
Sbjct: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296

Query: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVV 360
           +VDED H+MDIAVEA +LAQAIGRNGQNVRLA+QL+GWELNVMTV D+ AKHQAE+   +
Sbjct: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356

Query: 361 ALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAIST 420
             F   LD+DEDFA VL +EGF++LEE+AYVP+ ELL I+G DE  VEALRERAK A++T
Sbjct: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416

Query: 421 RALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEE 480
            A   EE+L   +P+++LLNLEG+DR LAF LA+RGV TLEDLAEQGIDDL +IE LT+E
Sbjct: 417 IAQVQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDE 476

Query: 481 KAGALIMAARNICWFGEES 499
           KAGALIMAARNICWFG+E+
Sbjct: 477 KAGALIMAARNICWFGDEA 495