Pairwise Alignments

Query, 262 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 288 a.a., Inner membrane protein YpjD from Escherichia coli ECRC102

 Score =  215 bits (547), Expect = 1e-60
 Identities = 113/262 (43%), Positives = 172/262 (65%), Gaps = 2/262 (0%)

Query: 1   MVLFSASAMFFYCIALILVTSRLFHAEGPNRRAVAAVASIAVVLHAAALQQAIFTD--DG 58
           M +F+  A+  Y ++L L+   L    G  RR     A IA+V HA AL+  I  D   G
Sbjct: 26  MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSG 85

Query: 59  QNFSLTNVISLVNWIIAFTFSVLIFRLKVIVVVPVVYACSVLSVALLWLVPPKYITHFEH 118
           QN SL NV SLV+ +I    +++  R +  +++P+VYA +++++AL   +P +YITH E 
Sbjct: 86  QNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEA 145

Query: 119 NPEVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLILSPAMPPLMTVEKQLYHLV 178
            P +L H+ LSL +Y+ L+IAALYA+QLA I  +LK K+L  +  MPPLM++E++++H+ 
Sbjct: 146 TPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHIT 205

Query: 179 IIGVILLSLGLATGFIFLDDMFAEGKGHKAILSIMAWFVYIAMLWQQYSVGCRIRTAIAY 238
            IGV+LL+L L TG  ++ ++F+     KA+LSI+AWFVYI +LW  Y  G R R  + +
Sbjct: 206 QIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWF 265

Query: 239 TLTGATLLSLAYFGARIVKELI 260
            + GA +L+LAYFG+RIV++LI
Sbjct: 266 NVAGAVILTLAYFGSRIVQQLI 287