Pairwise Alignments

Query, 502 a.a., ribonuclease G (RefSeq) from Shewanella amazonensis SB2B

Subject, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

 Score =  218 bits (555), Expect = 8e-61
 Identities = 129/381 (33%), Positives = 199/381 (52%), Gaps = 3/381 (0%)

Query: 107 IAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVG-VSQRIESEDER 165
           I E++++ Q ++VQV K+  G KGA LTT ++L  RY V MP +A  G +S++I    +R
Sbjct: 269 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDR 328

Query: 166 TRLKEATLPF-VDEDGGFIIRTAAEGAGAEELAQDAAFLRRVWAKVAERRKRKGSS-LLY 223
            RLKE      V +  G I+RTA       E+ +D  +L R+W  V        +  L+Y
Sbjct: 329 KRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 388

Query: 224 QDLALPVRIVRDFVGTDLDRIQVDSRSTFEELKHFAQEFMPEFEEKIELYSGSVPIFDLY 283
           ++ +L  R +RD    D+  I V     + E K F +  MP   + ++ Y    PIF   
Sbjct: 389 EEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRS 448

Query: 284 DVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQA 343
            +E ++ R L  +V LKSGGYLII+QTEA+  +D+N+G      ++EET   TNLEA + 
Sbjct: 449 GIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAEE 508

Query: 344 IARQLRLRNLGGIIIIDFIDMLSEDHRQRVLSSLTSALAHDRVKTNVSGFSGLGLVEMTR 403
           +ARQLRLR+L G+++IDFIDM  + + + V   L   L +DR +  V   S  GL+EM+R
Sbjct: 509 VARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSR 568

Query: 404 KRTRESLEHVLCGECPACKGSGYMKTVETVTYEIFREIIRLDKAYDADEFLVYCAPAVHA 463
           +R R S+       C  C G+G++++  ++   + R +             V C P    
Sbjct: 569 QRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETAL 628

Query: 464 CLSGDEHHHVAELEVYIGKRI 484
            L   +   + + E   G  I
Sbjct: 629 YLLNHKRGSIVDYEGRFGVAI 649



 Score = 53.5 bits (127), Expect = 3e-11
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 25/202 (12%)

Query: 15  IGSELLINVT-PNEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKISRVLPGMQAAFVD 73
           +  ++LI+ +   E RV +V    ++E   E   K+ + GNIY  K++RV P +QAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 74  IGLDKAAFLHASDIMPHTECVADVEKGNFVVRDIAELVRQGQDI--------------MV 119
            G ++  FL  ++I P    +   ++   +++  AE  R+  D               + 
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADR-QALLKAEAEDHRRSDDFESADAPESGAPMIDLS 119

Query: 120 QVVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVGVSQRIESEDERTRLKEATLPFVDED 179
           QV +  +G   A  TTD+ +        P S  V     +E   E    +E      ++ 
Sbjct: 120 QVDQPDVGIVAASETTDVAVTEE---VAPVSEAVSEETAVEVVAEEAPAEE------EKP 170

Query: 180 GGFIIRTAAEGAGAEELAQDAA 201
              + R  A+   AEE+A +AA
Sbjct: 171 KKRVRRPRAKKKTAEEIAAEAA 192