Pairwise Alignments

Query, 490 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 346 a.a., predicted permease (NCBI) from Escherichia coli BW25113

 Score = 57.8 bits (138), Expect = 6e-13
 Identities = 28/110 (25%), Positives = 52/110 (47%)

Query: 18  LLGLFLAGMLKMFVPMAWMQKQLGGHGFKATVKAALLGAPLPLCSCGVIPAAVGLRRSGA 77
           +LG+ L  ++++ +P  W+ + LG   F+ T+   L   P  +C+C   P A G+RR   
Sbjct: 82  VLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQV 141

Query: 78  SKAATTSFLVSTPETGVDSVTVSYVLLGPFMAIVRPIAAVTSAIVAGLLV 127
           S     +F +  P     ++     +LG   A +R +A +   ++   LV
Sbjct: 142 SMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLV 191



 Score = 53.9 bits (128), Expect = 9e-12
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 322 AIW--LLIGLFFAALVQTYVPADFLAQW--GNGILAMLVMVLVSIPMYICATASTPIAAG 377
           A+W   ++G+   +L+Q  +P D+L +    +     L+  L S+P  +C   + P+AAG
Sbjct: 76  AVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAG 135

Query: 378 LLLAGVSPGAVLVFMMAGPATNIATLGVVTKELGKRALFGYLGGVLGVALVFGVLVNYLV 437
           +    VS G  L F M  P  N ATL  +   LG         G   + LV G+++  L+
Sbjct: 136 MRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLG--------WGFAAIRLVAGLVMVLLI 187

Query: 438 AT 439
           AT
Sbjct: 188 AT 189



 Score = 35.4 bits (80), Expect = 3e-06
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 349 NGILAMLVMVLVSIPMYICATASTPIAAGLLLAGVSPGAVLVFMMAGPATNIATLGVVTK 408
           N ++ ++ M +      I   A  PI   ++LAG+     L  +M  PA ++ +L ++ K
Sbjct: 259 NSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRK 318

Query: 409 ELGKRALFGYLGGVLGVALVFGVLVNYLVATF 440
               +AL  +L G +    V GV+V  L   F
Sbjct: 319 AFPAKAL--WLTGAM--VAVSGVIVGGLALLF 346