Pairwise Alignments

Query, 490 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 344 a.a., putative permease from Alteromonas macleodii MIT1002

 Score = 73.9 bits (180), Expect = 8e-18
 Identities = 88/417 (21%), Positives = 153/417 (36%), Gaps = 104/417 (24%)

Query: 17  LLLGL-FLAGMLKMFVPMAWMQKQLGGHGFKATVKAALLGAPLPLCSCGVIPAAVGLRRS 75
           L +G+  L G+L+  +P + ++  L   G +    AA LGA  P CSC  IP   GL R+
Sbjct: 22  LFIGISLLVGVLQRHIPPSKVEALLTSSGKRGYFLAAGLGAITPFCSCSTIPMLKGLIRA 81

Query: 76  GASKAATTSFLVSTPETGVDSVTVSYVLLGPFMAIVRPIAAVTSAIVAGLLVGRDEDTPD 135
            A       FL S+P      V +     G  +  +  +AA+  A+ AG L+        
Sbjct: 82  RAGFGPMMVFLFSSPLLNPIVVGLLVATFGWTLTAIYVLAALVVAVGAGWLL-------- 133

Query: 136 NASQSAETSSDKQSDKPITQAAKPAMSFKPVAANSPLMTPTGAKLAAAPAVSFKPVAENT 195
                                    + F+     +     +G   +A+P       A +T
Sbjct: 134 -----------------------HTLGFERYVRRTATQESSGCSSSASPC-----SATST 165

Query: 196 GRSCCSGNAEAEPKPESKPQPKSELRQESCCAPKAVAASCCDTNASCCDAKPAAETASCC 255
             SC + + +  PK              SC A +    S   T++ CCD++P        
Sbjct: 166 ASSCGTNSCDTTPK------------TASCGADRKTTVS---TSSECCDSQP-------- 202

Query: 256 SPKVVVPEASSCCAASSTSASTATSADTGCCGSTEQDARPANQPASVIERIWDGLVYAST 315
                                T T    G             + + V    W   +    
Sbjct: 203 ---------------------TVTVKKEG-------------KYSGVWREAWSDFI---- 224

Query: 316 DLVRDTAIWLLIGLFFAALVQTYVPADFLAQWG--NGILAMLVMVLVSIPMYICATASTP 373
           D++    I + IG    +++  ++P D L Q+   +   A+ V  ++ +P+YI A A  P
Sbjct: 225 DVLPYLLIGIAIG----SVIYGFMPTDLLEQYAGPDNPFAIPVAAVIGVPLYIRAEAVIP 280

Query: 374 IAAGLLLAGVSPGAVLVFMMAGPATNIATLGVVTKELGKRALFGYLGGVLGVALVFG 430
           +AA L+  GV  G VL  ++     ++  L ++      + L  +L  +  +A++ G
Sbjct: 281 LAAALMAKGVGAGTVLALIIGSAGASLTELILLRSLFTLKLLAAFLAVIFAMAMIAG 337



 Score = 42.7 bits (99), Expect = 2e-08
 Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 10  FLESAPWLLLGLFLAGMLKMFVPMAWMQKQLGGHGFKATVKAALLGAPLPLCSCGVIPAA 69
           F++  P+LL+G+ +  ++  F+P   +++  G     A   AA++G PL + +  VIP A
Sbjct: 223 FIDVLPYLLIGIAIGSVIYGFMPTDLLEQYAGPDNPFAIPVAAVIGVPLYIRAEAVIPLA 282

Query: 70  VGLRRSGASKAATTSFLVSTPETGVDSVTV-----SYVLLGPFMAIVRPIAAV 117
             L   G       + ++ +    +  + +     +  LL  F+A++  +A +
Sbjct: 283 AALMAKGVGAGTVLALIIGSAGASLTELILLRSLFTLKLLAAFLAVIFAMAMI 335



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 367 CATASTPIAAGLLLAGVSPGAVLVFMMAGPATNIATLGVVTKELGKRALFGYLGGVLGV- 425
           C+ ++ P+  GL+ A    G ++VF+ + P  N   +G++       A FG+    + V 
Sbjct: 67  CSCSTIPMLKGLIRARAGFGPMMVFLFSSPLLNPIVVGLLV------ATFGWTLTAIYVL 120

Query: 426 -ALVFGVLVNYLVATFGFE 443
            ALV  V   +L+ T GFE
Sbjct: 121 AALVVAVGAGWLLHTLGFE 139