Pairwise Alignments

Query, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella amazonensis SB2B

Subject, 359 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas sp. DMC3

 Score =  344 bits (882), Expect = 2e-99
 Identities = 176/360 (48%), Positives = 242/360 (67%), Gaps = 5/360 (1%)

Query: 7   DPQQYEQQLEQKCQALTEAFAHYNPPALEVFPSAPAHYRMRCEFRVWHDGDDLYYCMFDN 66
           D Q Y +QLE K   L +  A ++ P   VF S   ++R+R EFR+W +G + +Y MF  
Sbjct: 4   DSQAYAEQLEAKVTRLRDLLAPFDAPEPTVFDSPLQNFRLRAEFRLWREGGERHYAMFSQ 63

Query: 67  VAKEK-VRTDQFLPASELINRMMPALLDELRPNRALRHKLFQVDFLSTLSGEILVSLLYH 125
             K   +  ++F  AS  IN++MP L    + + AL HKLFQV+FL+TL+G+ +++L YH
Sbjct: 64  DDKRTPILIEEFPIASLRINQLMPQLKAAWQASSALSHKLFQVEFLTTLAGDAMITLCYH 123

Query: 126 RQLDDQWLTEARALKARLGEHFKVDIIGRARKQKFVLDRDFVVESLDVDGKTLHYKQVEN 185
           R LD+ W   A  L A LG    V IIGR++ ++ VL +D+VVE L+V G+T  Y+Q E 
Sbjct: 124 RPLDEHWHAAATQLSADLG----VSIIGRSKGKREVLGQDYVVEKLEVSGRTFSYRQPEG 179

Query: 186 SFTQPNAGVAVKMLEWALDATKQSSGDLLELYCGNGNFSIALAPNFGKVLATELAKPSVE 245
           +FTQPN  V  KML WA +A    S DLLELYCGNGNF++ LA    KVLATE++K SV 
Sbjct: 180 AFTQPNGTVNQKMLNWAYEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVN 239

Query: 246 AAQYNIQVNKVSNLDIVRMSAEEFTEAMKGEKRFNRLGDIDLQSYQCNTIFVDPPRAGLD 305
           AA  N+  N V N+ +VR+SAEE TEA+   + F RL  IDL+SY+ +++FVDPPRAG+D
Sbjct: 240 AALSNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFSSVFVDPPRAGMD 299

Query: 306 DETVKLVQGYENILYISCNPDTLNDNLKVLSETHEVVRFALFDQFPYTHHTEAGVMLKRR 365
            +T +L + ++NILYISCNPDTL  N+  L +TH + + A+FDQFP+THH E+GV+L RR
Sbjct: 300 PDTCELTRRFDNILYISCNPDTLAANIAQLHDTHRITKCAMFDQFPWTHHMESGVLLTRR 359