Pairwise Alignments

Query, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella amazonensis SB2B

Subject, 359 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Pseudomonas fluorescens SBW25

 Score =  336 bits (862), Expect = 5e-97
 Identities = 170/360 (47%), Positives = 239/360 (66%), Gaps = 5/360 (1%)

Query: 7   DPQQYEQQLEQKCQALTEAFAHYNPPALEVFPSAPAHYRMRCEFRVWHDGDDLYYCMFDN 66
           D  +Y  QL+ K   L +  A ++ P  +VF S   ++R+R EFR+W +G + +Y MF  
Sbjct: 4   DAARYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMFSQ 63

Query: 67  VAKEK-VRTDQFLPASELINRMMPALLDELRPNRALRHKLFQVDFLSTLSGEILVSLLYH 125
             K   +  ++F  AS+ IN++MP L    + + AL HKLFQV+FL+TL+G+ +++L YH
Sbjct: 64  DDKRTPILIEEFPIASQRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYH 123

Query: 126 RQLDDQWLTEARALKARLGEHFKVDIIGRARKQKFVLDRDFVVESLDVDGKTLHYKQVEN 185
           R LD+ W T A  L   L     V IIGR++ ++ V+  D+VVE L+V G+T  Y+Q E 
Sbjct: 124 RPLDEHWHTAANKLATDLN----VSIIGRSKGKRDVIGHDYVVEKLEVGGRTFSYRQPEG 179

Query: 186 SFTQPNAGVAVKMLEWALDATKQSSGDLLELYCGNGNFSIALAPNFGKVLATELAKPSVE 245
           +FTQPN  V  KML WA DA      DLLELYCGNGNF++ LA    KVLATE++K SV 
Sbjct: 180 AFTQPNGTVNQKMLNWAYDALGDRPDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVN 239

Query: 246 AAQYNIQVNKVSNLDIVRMSAEEFTEAMKGEKRFNRLGDIDLQSYQCNTIFVDPPRAGLD 305
           AA  N+  N V N+ +VR+SAEE TEA+   + F RL  IDL+ Y+ +++FVDPPRAG+D
Sbjct: 240 AALSNLDENAVGNVTLVRLSAEELTEALNEVRPFRRLHGIDLKRYEFSSVFVDPPRAGMD 299

Query: 306 DETVKLVQGYENILYISCNPDTLNDNLKVLSETHEVVRFALFDQFPYTHHTEAGVMLKRR 365
            +T +L + ++NILYISCNP+TL  N+  L +TH + + A+FDQFP+THH E+GV+L RR
Sbjct: 300 PDTCELTRRFDNILYISCNPETLAANIAQLHDTHRITKCAMFDQFPWTHHMESGVLLTRR 359