Pairwise Alignments

Query, 703 a.a., type II and III secretion system protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 809 a.a., type II secretion system protein GspD from Ralstonia solanacearum UW163

 Score =  305 bits (782), Expect = 4e-87
 Identities = 237/735 (32%), Positives = 361/735 (49%), Gaps = 100/735 (13%)

Query: 12  ASLVAGTVLLSPAIAW-------SASN--EQLAPSFKNAEIQEFINTVGKRLNKTIIVDP 62
           A++VAG++ ++PA A        +ASN  ++++ +F NA+++  +  VG+   K  IVDP
Sbjct: 24  ATMVAGSLPVTPAFAAPPASQAPAASNAGDEVSLNFVNADLETVVKAVGQATGKNFIVDP 83

Query: 63  TIRGKINVRSYDNLTEDQYFQFFLNVLQVYGYAVVEMENGVLKVIKDKDAKT--SNIRVA 120
            ++G +N+ +   +T  Q  +   ++L++ GYA+VE  NG  KV+ + DAK   S   V 
Sbjct: 84  RVKGTVNLVTEKPVTRAQALESLGSILRMQGYAIVE-GNGFTKVVPEADAKLQGSPTSVG 142

Query: 121 DDSAPGLGDELVTRIVPLYNSEAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMLTGRAAVV 180
             SA G G+++VT++  L    A  L P+LR +   A    +  Y  +N L++T  A  +
Sbjct: 143 TGSARG-GEQVVTQVFRLQYESANNLVPVLRPMI--APNNTITAYPANNTLVITDYADNL 199

Query: 181 NKLVEIVKRVDKQGDTEVLVVPLQHASASEMVRIIDTLYRASANQAQLPGQA-------- 232
            ++  I+  +D     E  ++PL++A A +    +  L   S       G A        
Sbjct: 200 RRIARIIASIDSPAAGETELIPLKNAVAIDAAATLQKLLDPSGTAGGAGGGAGAALADPS 259

Query: 233 --PKVVADERINAVVISGDEKSRQ-RVVELVKRLDAEQASTGNTKVRYLRYAKAEDLVEV 289
               VVA+ R N+V++     +R  +  +L+ RLD      GN  V  L+ A A  L   
Sbjct: 260 LRTSVVAEPRSNSVLVRASSAARMAQAKQLLARLDVPGTRPGNIWVVPLKNANAVQLATT 319

Query: 290 LTGFAQK---LEESKDNG-----------AQQ--------------------ASGKRRSQ 315
           L         L  S+  G           AQQ                    ASG   S 
Sbjct: 320 LRAIVAADATLSASQSGGPGGQSAAQGAQAQQPATTGTQSSQSTQTGSYGGGASGSSGSG 379

Query: 316 IN---------------------IMAHTDTNALVISAEPDQMRTLESVINQLDIRRAQVL 354
           +                      I A   TNAL+I+A     R L +VI+ LD RRAQV 
Sbjct: 380 MGSGNSSFRASFGQSNLPTTGGIIQADPATNALIITASEPVYRNLRTVIDDLDARRAQVY 439

Query: 355 VEAIIVEVAEGDDVGFGVQWATESGGGTQFNNLGPTIGEIGAGIWQARGEEASEVTTIDG 414
           +E++IVEV        G+QW   +GG   +   G   G  G G     G  A+ V    G
Sbjct: 440 IESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGS-GVGNILNLGVVAATV----G 494

Query: 415 NGNPIVSKNPEKRGDITLLAQALGKVNGMAWGVAMGD--FGALIQAVSSDTNSNVLATPS 472
           +G   +     +    T+    +  +NG  +GV   +   GA++ A+ SD + NVL+TP+
Sbjct: 495 SGG--IGSTAAQTALGTITGSNVSSLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 552

Query: 473 ITTLDNQEAAFIVGDEVPVLTG--AQNSSNGNSNPFQTVERKEVGVKLKVTPQINEGNAV 530
           + TLDN+EA  ++G  VP+ TG  AQ  S+ +  PFQT +RK+VG+ L+V PQI +G  V
Sbjct: 553 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGLV 612

Query: 531 KLAIEQEVSGI-NGKTGVDV--TFATRRLTTTVMADSGQIVVLGGLINEEVQESVQKVPI 587
           K+ I QE S + NG        T   R + T V+A+ GQ++VLGGL+ +  Q+S QKVP 
Sbjct: 613 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 672

Query: 588 LGDIPLLGHLFKSSSSGKKKKNLMVFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQERG 647
           LGDIP+LG LF+S S  +KK NL+VF++P I+R       ++  +YNY R  Q +Q    
Sbjct: 673 LGDIPILGALFRSESKERKKTNLLVFLRPYILRTAEATGTLSDNRYNYMR--QTQQGFVS 730

Query: 648 VNLMPNTS---VPVL 659
            N++P TS    PVL
Sbjct: 731 PNVLPTTSDRDTPVL 745