Pairwise Alignments

Query, 703 a.a., type II and III secretion system protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 655 a.a., variant type II secretion system secretin EtpD from Escherichia coli ECRC101

 Score =  561 bits (1445), Expect = e-164
 Identities = 300/636 (47%), Positives = 424/636 (66%), Gaps = 38/636 (5%)

Query: 14  LVAGTVLLSPAIAWSASNEQLAPSFKNAEIQEFINTVGKRLNKTIIVDPTIRGKINVRSY 73
           LV  TV+L     W A   + + +FK+ +IQEFINTV K L+KT+I++P ++G I VRSY
Sbjct: 13  LVFTTVILGAIPGWGA---EFSANFKDTDIQEFINTVSKNLHKTVIINPDVQGTITVRSY 69

Query: 74  DNLTEDQYFQFFLNVLQVYGYAVVEMENGVLKVIKDKDAKTSNIRVADDSAPGLGDELVT 133
           D L E+QY+QFFL+VL VYG+AVV+M NG+LKV++ KDAKTS + VA D +PG GDE+VT
Sbjct: 70  DMLNEEQYYQFFLSVLDVYGFAVVDMHNGILKVVRSKDAKTSAVPVASDVSPGTGDEVVT 129

Query: 134 RIVPLYNSEAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMLTGRAAVVNKLVEIVKRVDKQ 193
           R+VP+ N  A+ LAPLLRQLNDNAG G+VV+Y+PSNVL++TGRAAV+ +L+EIV+RVDK 
Sbjct: 130 RVVPVSNVAARDLAPLLRQLNDNAGAGSVVHYEPSNVLLMTGRAAVMKRLMEIVERVDKV 189

Query: 194 GDTEVLVVPLQHASASEMVRIIDTLYRASANQAQLPGQAPKVVADERINAVVISGDEKSR 253
           G+  V  VPL +ASA+++ R++  L + +   A       K+VADER N+V++SG+  S+
Sbjct: 190 GNRSVATVPLTYASATDVARLVTELTKETDKTAIPAWMTAKLVADERTNSVLVSGEPISQ 249

Query: 254 QRVVELVKRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEESKDNGAQQASGKRR 313
           QR++ ++K+LD ++   GNTKV YL+YAKA+DLVEVLTG +  +E   D+    ++   R
Sbjct: 250 QRIISIIKQLDRQEDVQGNTKVIYLKYAKAKDLVEVLTGISSSIE--NDSKKSPSTEALR 307

Query: 314 SQINIMAHTDTNALVISAEPDQMRTLESVINQLDIRRAQVLVEAIIVEVAEGDDVGFGVQ 373
             + I +H  TNAL+++  PD +R LE+VI+QLDIRR QVLVEAII E+ + D +  G+Q
Sbjct: 308 KGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRRPQVLVEAIIAEIQDADGLNLGIQ 367

Query: 374 WATESGGGTQFNNLGPTIGEIGAGIWQARGEEASEVTTIDGNGNPIVSKNPEKRGDITLL 433
           W  +  G  QF + G  I                  T +    N I+  +          
Sbjct: 368 WVNKHAGVAQFTSTGLPI-----------------TTMVQTRQNEILDSDQ--------- 401

Query: 434 AQALGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLT 493
           + AL   NG+A G   G++  L+ A+S+ + +++LATPSI TLDN EA F VG EVPVL+
Sbjct: 402 SNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLS 461

Query: 494 GAQNSSNGNSNPFQTVERKEVGVKLKVTPQINEGNAVKLAIEQEVSGING-----KTGVD 548
           G+Q +S    N F TVERK VG+KL+V PQINEG++V L IEQEVSG+        T + 
Sbjct: 462 GSQTTS--GDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLG 519

Query: 549 VTFATRRLTTTVMADSGQIVVLGGLINEEVQESVQKVPILGDIPLLGHLFKSSSSGKKKK 608
            TF TR +T  ++  +G+ VV+GGL+++ ++ S  KVP+LGDIP+LGHLF++ S    K+
Sbjct: 520 ATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAKSEQTAKR 579

Query: 609 NLMVFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQ 644
           NLM+FI+PTIIR+       +  KY  F   Q++ +
Sbjct: 580 NLMLFIRPTIIRERDGFRHASAEKYQSFNQEQVQSR 615